General information
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| PDB ID | 4PDI |
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| Title | CRYSTAL STRUCTURE OF A COMPLEX BETWEEN AN INHIBITED LLFPG AND A N7- BENZYL-FAPY-DG CONTAINING DNA | ||||
| PDB header | HYDROLASE/DNA | ||||
| Date | 2014-04-18 | ||||
| Experimental method | X-RAY DIFFRACTION | ||||
| Resolution (A) | 2.1 | ||||
| Kind | dna | ||||
| Organism | LACTOCOCCUS LACTIS SUBSP. CREMORIS, SYNTHETIC CONSTRUCT | ||||
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Quick Links
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Composition of PDB entry and biounits
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| File: | Protein chains: | DNA chains: | RNA chains: | No. of models: | Action: |
| PDB entry: | |||||
| pdb4pdi.pdb | A | BC | 0 |
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| Biounits: | |||||
| 4pdi.pdb1.pdb | A | BC | 1 |
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Pfam domains
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| Name: | Type: | Domain: | E-value: | Significance: | Clan: | Prot. chain: | Start res.: | End res.: | Nuc. chains: | Int. mode: | Action: |
H2TH
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Domain | P42371_132-225 | 1.8e-33 | 1 |
CL0303
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A | 131 | 225 | BC | H-Bb L-Bb |
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Fapy_DNA_glyco
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Domain | P42371_2-115 | 5.6e-28 | 1 | No_clan | A | 1 | 114 | BC | S-Bb L-Bb L-Mj L-Mn |
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zf-FPG_IleRS
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Domain | P42371_244-272 | 7.9e-12 | 1 |
CL0167
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A | 242 | 270 | B | S-Bb |
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SCOP domains
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| No SCOP domains | |||||||
| GO terms | ||
| Protein chains: | GO type: | GO description: |
| A=2-273 | F | class I DNA-(apurinic or apyrimidinic site) endonuclease activity |
| A=2-273 | F | damaged DNA binding |
| A=2-273 | F | oxidized purine nucleobase lesion DNA N-glycosylase activity |
| A=2-273 | F | zinc ion binding |
| A=2-273 | P | base-excision repair |
| A=2-273 | P | nucleotide-excision repair |
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Sequences
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Download file with secondary structure created by Stride
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4pdi.pdb1.pdb:
[
download sequences in FASTA format
]
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B (dna):
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C (dna):
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A (protein):
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