General information
PDB ID 4PJO
Title MINIMAL U1 SNRNP
PDB header SPLICING
Date 2014-05-12
Experimental method X-RAY DIFFRACTION
Resolution (A) 3.3
Kind rna
Organism HOMO SAPIENS
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
PRIDB
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb4pjo.pdb ABCDEFGKLabcdefgklOPQRSTUNMopqrstunm 1X2x3Y4y 0
Biounits:
4pjo.pdb1.pdb ABCDEFGKL 1X 1
4pjo.pdb2.pdb abcdefgkl 2x 1
4pjo.pdb3.pdb OPQRSTUNM 3Y 1
4pjo.pdb4.pdb opqrstunm 4y 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
LSM Domain P62318_8-73 2.6e-16 1 CL0527 a 8 73 2   
LSM Domain P62318_8-73 2.7e-16 1 CL0527 A 8 73 1   
LSM Domain P14678_7-82 1.7e-21 1 CL0527 b 7 82 2   
LSM Domain P14678_7-82 3.1e-21 1 CL0527 B 7 82 1   
LSM Domain P62314_5-70 2.1e-19 1 CL0527 C 5 70 1   
LSM Domain P62314_5-70 2.1e-19 1 CL0527 C 5 70 1   
LSM Domain P62314_5-70 2.2e-19 1 CL0527 c 5 70 2   
LSM Domain P62314_5-70 2.2e-19 1 CL0527 c 5 70 2   
LSM Domain P62316_33-111 1.1e-19 1 CL0527 d 33 111 2   
LSM Domain P62316_33-111 3.1e-19 1 CL0527 D 33 111 1   
LSM Domain P62304_23-89 4.9e-18 1 CL0527 E 23 89 1   
LSM Domain P62304_23-89 4.9e-18 1 CL0527 E 23 89 1   
LSM Domain P62304_23-89 4.9e-18 1 CL0527 e 23 89 2   
LSM Domain P62304_23-89 4.9e-18 1 CL0527 e 23 89 2   
LSM Domain P62306_9-74 1e-21 1 CL0527 F 9 74 1   
LSM Domain P62306_9-74 1.1e-21 1 CL0527 f 9 74 2   
LSM Domain P62308_7-72 6e-23 1 CL0527 g 7 72 2   
LSM Domain P62308_7-72 6.3e-23 1 CL0527 G 7 72 1   
zf-U1 Domain P09234_4-38 1.1e-22 1 CL0361 L 2 38 1X   
zf-U1 Domain P09234_4-38 1.1e-22 1 CL0361 L 2 38 1X   
zf-U1 Domain P09234_4-38 1.1e-22 1 CL0361 l 2 38 2x   
zf-U1 Domain P09234_4-38 1.1e-22 1 CL0361 l 2 38 2x   
zf-U1 Domain P09234_4-38 9.1e-23 1 CL0361 m 2 38 4y   
zf-U1 Domain P09234_4-38 9.1e-23 1 CL0361 m 2 38 4y   
zf-U1 Domain P09234_4-38 1.1e-22 1 CL0361 M 2 38 3Y   
zf-U1 Domain P09234_4-38 1.1e-22 1 CL0361 M 2 38 3Y   
LSM Domain P62318_8-73 2.4e-16 1 CL0527 o 8 73 4   
LSM Domain P62318_8-73 2.5e-16 1 CL0527 O 8 73 3   
LSM Domain P14678_7-82 3.1e-21 1 CL0527 P 7 82 3   
LSM Domain P14678_7-82 3.1e-21 1 CL0527 P 7 82 3   
LSM Domain P14678_7-82 3.5e-21 1 CL0527 p 7 82 4   
LSM Domain P14678_7-82 3.5e-21 1 CL0527 p 7 82 4   
LSM Domain P62314_5-70 2.1e-19 1 CL0527 Q 5 70 3   
LSM Domain P62314_5-70 2.2e-19 1 CL0527 q 5 70 4   
LSM Domain P62316_33-111 1.2e-19 1 CL0527 r 33 111 4   
LSM Domain P62316_33-111 2.6e-19 1 CL0527 R 33 111 3   
LSM Domain P62304_23-89 4.9e-18 1 CL0527 S 23 89 3   
LSM Domain P62304_23-89 4.9e-18 1 CL0527 S 23 89 3   
LSM Domain P62304_23-89 4.9e-18 1 CL0527 s 23 89 4   
LSM Domain P62304_23-89 4.9e-18 1 CL0527 s 23 89 4   
LSM Domain P62306_9-74 1.1e-21 1 CL0527 T 9 74 3   
LSM Domain P62306_9-74 1.1e-21 1 CL0527 T 9 74 3   
LSM Domain P62306_9-74 1.1e-21 1 CL0527 t 9 74 4   
LSM Domain P62306_9-74 1.1e-21 1 CL0527 t 9 74 4   
LSM Domain P62308_7-72 6e-23 1 CL0527 u 7 72 4   
LSM Domain P62308_7-72 1.3e-21 1 CL0527 U 7 72 3   
U1snRNP70_N Family P08621_3-59 3.2e-16 1 CL0221 k 3 59 2   
U1snRNP70_N Family P08621_3-59 3.4e-16 1 CL0221 K 3 59 1   
U1snRNP70_N Family P08621_3-59 3.4e-16 1 CL0221 n 3 59 4   
U1snRNP70_N Family P08621_3-59 1.1e-14 1 CL0221 N 6 58 3   
SCOP domains
No SCOP domains
GO terms
No GO terms
Sequences
Download file with secondary structure created by Stride  
4pjo.pdb1.pdb:   [ download sequences in FASTA format ]
A (protein): 
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B (protein): 
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C (protein): 
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D (protein): 
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E (protein): 
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F (protein): 
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G (protein): 
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K (protein): 
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L (protein): 
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1 (rna): 
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X (rna): 
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4pjo.pdb2.pdb:   [ download sequences in FASTA format ]
a (protein): 
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b (protein): 
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c (protein): 
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d (protein): 
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e (protein): 
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f (protein): 
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g (protein): 
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k (protein): 
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l (protein): 
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2 (rna): 
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x (rna): 
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4pjo.pdb3.pdb:   [ download sequences in FASTA format ]
M (protein): 
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N (protein): 
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O (protein): 
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P (protein): 
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Q (protein): 
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R (protein): 
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S (protein): 
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T (protein): 
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U (protein): 
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3 (rna): 
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Y (rna): 
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4pjo.pdb4.pdb:   [ download sequences in FASTA format ]
m (protein): 
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n (protein): 
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o (protein): 
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p (protein): 
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q (protein): 
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r (protein): 
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s (protein): 
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t (protein): 
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u (protein): 
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4 (rna): 
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y (rna): 
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