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Composition of PDB entry and biounits  
File:  Protein chains:  DNA chains:  RNA chains:  No. of models:  Action: 
PDB entry:  
pdb4qr9.pdb  AB  CDEF  0  
Biounits:  
4qr9.pdb1.pdb  AB  CDEF  1  
Pfam domains  
Name:  Type:  Domain:  Evalue:  Significance:  Clan:  Prot. chain:  Start res.:  End res.:  Nuc. chains:  Int. mode:  Action: 
HMG_box_2  Domain  P63159_878  1.5e28  1  CL0114  A  5  78  CDF  HBb HMj HMn LBb  
HMG_box_2  Domain  P63159_878  1.5e28  1  CL0114  B  5  78  CD  HBb HMj HMn LBb  
SCOP domains  
No SCOP domains  
GO terms  
Protein chains:  GO type:  GO description: 
A/B=881  C  alphavbeta3 integrinHMGB1 complex 
A/B=881  C  cell surface 
A/B=881  C  condensed chromosome 
A/B=881  C  cytoplasm 
A/B=881  C  cytosol 
A/B=881  C  early endosome 
A/B=881  C  endoplasmic reticulumGolgi intermediate compartment 
A/B=881  C  extracellular space 
A/B=881  C  membrane raft 
A/B=881  C  neuron projection 
A/B=881  C  nuclear chromatin 
A/B=881  C  nucleus 
A/B=881  C  transcription repressor complex 
A/B=881  F  5S rRNA binding 
A/B=881  F  bent DNA binding 
A/B=881  F  bubble DNA binding 
A/B=881  F  CXC chemokine binding 
A/B=881  F  calciumdependent protein kinase regulator activity 
A/B=881  F  chromatin binding 
A/B=881  F  crossed form fourway junction DNA binding 
A/B=881  F  cytokine activity 
A/B=881  F  damaged DNA binding 
A/B=881  F  DNA binding, bending 
A/B=881  F  DNA polymerase binding 
A/B=881  F  doublestranded DNA binding 
A/B=881  F  doublestranded RNA binding 
A/B=881  F  fourway junction DNA binding 
A/B=881  F  glycolipid binding 
A/B=881  F  heparin binding 
A/B=881  F  integrin binding 
A/B=881  F  lipopolysaccharide binding 
A/B=881  F  lyase activity 
A/B=881  F  open form fourway junction DNA binding 
A/B=881  F  peptide binding 
A/B=881  F  phosphatidylserine binding 
A/B=881  F  protein kinase activator activity 
A/B=881  F  RAGE receptor binding 
A/B=881  F  repressing transcription factor binding 
A/B=881  F  singlestranded DNA binding 
A/B=881  F  singlestranded RNA binding 
A/B=881  F  supercoiled DNA binding 
A/B=881  F  transcription coactivator activity 
A/B=881  F  transcription factor binding 
A/B=881  F  transcription regulatory region sequencespecific DNA binding 
A/B=881  P  actin cytoskeleton reorganization 
A/B=881  P  activation of innate immune response 
A/B=881  P  apoptotic cell clearance 
A/B=881  P  autophagy 
A/B=881  P  baseexcision repair 
A/B=881  P  cell chemotaxis 
A/B=881  P  cell morphogenesis 
A/B=881  P  cellular response to interleukin1 
A/B=881  P  cellular response to interleukin7 
A/B=881  P  cellular response to lipopolysaccharide 
A/B=881  P  chemotaxis 
A/B=881  P  chromatin assembly 
A/B=881  P  chromatin remodeling 
A/B=881  P  chromatin silencing 
A/B=881  P  circadian rhythm 
A/B=881  P  developmental process 
A/B=881  P  DNA geometric change 
A/B=881  P  DNA recombination 
A/B=881  P  endothelial cell chemotaxis 
A/B=881  P  endothelial cell proliferation 
A/B=881  P  eye development 
A/B=881  P  induction of positive chemotaxis 
A/B=881  P  inflammatory response 
A/B=881  P  inflammatory response to antigenic stimulus 
A/B=881  P  lung development 
A/B=881  P  macrophage activation involved in immune response 
A/B=881  P  malespecific defense response to bacterium 
A/B=881  P  myeloid dendritic cell activation 
A/B=881  P  myoblast proliferation 
A/B=881  P  negative regulation of apoptotic cell clearance 
A/B=881  P  negative regulation of blood vessel endothelial cell migration 
A/B=881  P  negative regulation of CD4positive, alphabeta T cell differentiation 
A/B=881  P  negative regulation of DNA replication 
A/B=881  P  negative regulation of interferongamma production 
A/B=881  P  negative regulation of RNA polymerase II transcription preinitiation complex assembly 
A/B=881  P  negative regulation of transcription by RNA polymerase II 
A/B=881  P  nervous system development 
A/B=881  P  neuron projection development 
A/B=881  P  neutrophil clearance 
A/B=881  P  plasmacytoid dendritic cell activation 
A/B=881  P  positive regulation of activated T cell proliferation 
A/B=881  P  positive regulation of apoptotic process 
A/B=881  P  positive regulation of autophagy 
A/B=881  P  positive regulation of blood vessel endothelial cell migration 
A/B=881  P  positive regulation of cell death 
A/B=881  P  positive regulation of cell migration 
A/B=881  P  positive regulation of cell population proliferation 
A/B=881  P  positive regulation of chemokine (CXC motif) ligand 2 production 
A/B=881  P  positive regulation of cysteinetype endopeptidase activity involved in apoptotic process 
A/B=881  P  positive regulation of cytosolic calcium ion concentration 
A/B=881  P  positive regulation of dendritic cell differentiation 
A/B=881  P  positive regulation of DNA binding 
A/B=881  P  positive regulation of DNA ligation 
A/B=881  P  positive regulation of ERK1 and ERK2 cascade 
A/B=881  P  positive regulation of glycogen catabolic process 
A/B=881  P  positive regulation of innate immune response 
A/B=881  P  positive regulation of interferonalpha production 
A/B=881  P  positive regulation of interferonbeta production 
A/B=881  P  positive regulation of interleukin1 beta production 
A/B=881  P  positive regulation of interleukin1 production 
A/B=881  P  positive regulation of interleukin10 production 
A/B=881  P  positive regulation of interleukin12 production 
A/B=881  P  positive regulation of interleukin6 production 
A/B=881  P  positive regulation of interleukin8 production 
A/B=881  P  positive regulation of JNK cascade 
A/B=881  P  positive regulation of macrophage inflammatory protein 1 alpha production 
A/B=881  P  positive regulation of MAPK cascade 
A/B=881  P  positive regulation of mesenchymal cell proliferation 
A/B=881  P  positive regulation of mismatch repair 
A/B=881  P  positive regulation of mitotic cell cycle 
A/B=881  P  positive regulation of monocyte chemotactic protein1 production 
A/B=881  P  positive regulation of monocyte chemotaxis 
A/B=881  P  positive regulation of myeloid cell apoptotic process 
A/B=881  P  positive regulation of myeloid cell differentiation 
A/B=881  P  positive regulation of myoblast differentiation 
A/B=881  P  positive regulation of neuron projection development 
A/B=881  P  positive regulation of NIK/NFkappaB signaling 
A/B=881  P  positive regulation of protein phosphorylation 
A/B=881  P  positive regulation of smooth muscle cell migration 
A/B=881  P  positive regulation of sprouting angiogenesis 
A/B=881  P  positive regulation of tolllike receptor 2 signaling pathway 
A/B=881  P  positive regulation of tolllike receptor 4 signaling pathway 
A/B=881  P  positive regulation of tolllike receptor 9 signaling pathway 
A/B=881  P  positive regulation of transcription by RNA polymerase II 
A/B=881  P  positive regulation of tumor necrosis factor production 
A/B=881  P  positive regulation of vascular endothelial cell proliferation 
A/B=881  P  positive regulation of wound healing 
A/B=881  P  proteincontaining complex assembly 
A/B=881  P  regulation of inflammatory response 
A/B=881  P  regulation of nucleotideexcision repair 
A/B=881  P  regulation of restriction endodeoxyribonuclease activity 
A/B=881  P  regulation of signaling receptor activity 
A/B=881  P  regulation of T cell mediated immune response to tumor cell 
A/B=881  P  regulation of tolerance induction 
A/B=881  P  regulation of transcription by RNA polymerase II 
A/B=881  P  regulation of transcription, DNAtemplated 
A/B=881  P  response to drug 
A/B=881  P  response to glucocorticoid 
A/B=881  P  response to glucose 
A/B=881  P  response to heat 
A/B=881  P  response to insulin 
A/B=881  P  response to interferongamma 
A/B=881  P  response to lipopolysaccharide 
A/B=881  P  Thelper 1 cell activation 
A/B=881  P  Thelper 1 cell differentiation 
A/B=881  P  tumor necrosis factor secretion 
A/B=881  P  V(D)J recombination 
Sequences 
Download file with secondary structure created by Stride 
4qr9.pdb1.pdb:
[
download sequences in FASTA format
]

C (dna):
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D (dna):
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E (dna):
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F (dna):
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A (protein):
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B (protein):
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