General information
PDB ID 4R8P
Title CRYSTAL STRUCTURE OF THE RING1B/BMI1/UBCH5C PRC1 UBIQUITYLATION MODULE BOUND TO THE NUCLEOSOME CORE PARTICLE
PDB header STRUCTURAL PROTEIN/DNA
Date 2014-09-02
Experimental method X-RAY DIFFRACTION
Resolution (A) 3.28
Kind dna
Organism XENOPUS LAEVIS, SYNTHETIC DNA, HOMO SAPIENS
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb4r8p.pdb ABCDEFGHKLMN IJ 0
Biounits:
4r8p.pdb1.pdb ABCDEFGHKLMN IJ 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Histone Domain P84233_39-132 3.4e-46 1 CL0012 A 37 131 IJ   
CENP-T_C Domain P62799_18-99 0.00000001 1 CL0012 B 23 98 IJ   
Histone Domain P06897_19-91 0.0000000000000011 1 CL0012 C 16 90 IJ   
Histone Domain P02281_33-102 6.3e-22 1 CL0012 D 31 101 IJ   
Histone Domain P84233_39-132 6.9e-46 1 CL0012 E 38 131 IJ   
CENP-T_C Domain P62799_26-99 0.0000000095 1 CL0012 F 25 98 IJ   
Histone Domain P06897_13-91 5.2e-16 1 CL0012 G 12 90 IJ   
Histone Domain P02281_33-102 6.3e-22 1 CL0012 H 31 101 IJ   
zf-C3HC4_2 Domain P35226_17-56 0.00000000003 1 CL0229 K 17 56   
UQ_con Domain P61077_5-142 2.2e-52 1 CL0208 L 205 342 IJ   
zf-C3HC4_2 Domain Q99496_50-90 5e-16 1 CL0229 L 50 90   
zf-C3HC4_2 Domain P35226_17-56 0.000000000025 1 CL0229 M 17 56   
UQ_con Domain P61077_5-142 2.2e-52 1 CL0208 N 205 342   
zf-C3HC4_2 Domain Q99496_50-90 5e-16 1 CL0229 N 50 90   
Histone_H2A_C Family P06897_92-120 2.4e-18 1 No_clan C 91 119   
Histone_H2A_C Family P06897_92-120 2.1e-17 1 No_clan G 91 118   
SCOP domains
No SCOP domains
GO terms
No GO terms
Sequences
Download file with secondary structure created by Stride  
4r8p.pdb1.pdb:   [ download sequences in FASTA format ]
I (dna): 
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J (dna): 
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A (protein): 
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B (protein): 
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C (protein): 
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D (protein): 
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E (protein): 
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F (protein): 
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G (protein): 
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H (protein): 
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K (protein): 
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L (protein): 
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M (protein): 
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N (protein): 
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