General information
PDB ID 4R8U
Title S-SAD STRUCTURE OF DINB-DNA COMPLEX
PDB header TRANSFERASE/DNA
Date 2014-09-03
Experimental method X-RAY DIFFRACTION
Resolution (A) 2.3
Kind dna
Organism ESCHERICHIA COLI K-12, SYNTHETIC CONSTRUCT
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
 PDIdb 
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb4r8u.pdb AB VWCD 0
Biounits:
4r8u.pdb1.pdb A VW 1
4r8u.pdb2.pdb B CD 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
IMS_C Domain Q47155_240-341 2.3e-07 1 No_clan A 241 341 VW  H-Bb S-Bb L-Bb 
IMS_C Domain Q47155_240-341 4.9e-07 1 No_clan B 241 339 CD  H-Bb S-Bb L-Bb 
IMS Family Q47155_7-154 5e-49 1 No_clan A 8 155 WV  H-Bb S-Bb 
IMS Family Q47155_7-154 4.9e-49 1 No_clan B 8 155 DC  S-Bb L-Bb 
IMS_HHH Motif Q47155_166-197 5.8e-08 1 CL0198 A 167 198 W  H-Bb L-Bb 
IMS_HHH Motif Q47155_166-197 5.7e-08 1 CL0198 B 167 198 D  H-Bb L-Bb 
SCOP domains
No SCOP domains
GO terms
Protein chains: GO type: GO description:
A=2-340, B=2-338 C cytoplasm
A=2-340, B=2-338 F damaged DNA binding
A=2-340, B=2-338 F DNA-directed DNA polymerase activity
A=2-340, B=2-338 F magnesium ion binding
A=2-340, B=2-338 P cellular response to DNA damage stimulus
A=2-340, B=2-338 P DNA synthesis involved in DNA repair
A=2-340, B=2-338 P DNA-dependent DNA replication
A=2-340, B=2-338 P error-prone translesion synthesis
A=2-340, B=2-338 P SOS response
A=2-340, B=2-338 P translesion synthesis
Sequences
Download file with secondary structure created by Stride  
4r8u.pdb1.pdb:   [ download sequences in FASTA format ]
V (dna): 
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W (dna): 
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A (protein): 
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4r8u.pdb2.pdb:   [ download sequences in FASTA format ]
C (dna): 
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D (dna): 
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B (protein): 
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