General information
PDB ID 4RDU
Title CRYSTAL STRUCTURE OF A DISTAL-LESS HOMEOBOX PROTEIN 5 (DLX5) FROM HOMO SAPIENS AT 1.85 A RESOLUTION
PDB header TRANSCRIPTION/DNA
Date 2014-09-19
Experimental method X-RAY DIFFRACTION
Resolution (A) 1.85
Kind dna
Organism HOMO SAPIENS, SYNTHETIC CONSTRUCT
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
 PDIdb 
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb4rdu.pdb AD BCEF 0
Biounits:
4rdu.pdb1.pdb A BC 1
4rdu.pdb2.pdb D EF 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Homeodomain Domain P56178_138-194 1.3e-21 1 CL0123 A 138 194 BC  H-Bb H-Mj L-Bb L-Mn 
Homeodomain Domain P56178_138-194 1.4e-21 1 CL0123 D 138 194 EF  H-Bb H-Mj L-Bb L-Mn 
SCOP domains
No SCOP domains
GO terms
Protein chains: GO type: GO description:
A/D=135-198 C cytoplasm
A/D=135-198 C nuclear chromatin
A/D=135-198 C nucleus
A/D=135-198 F DNA-binding transcription activator activity, RNA polymerase II-specific
A/D=135-198 F DNA-binding transcription factor activity
A/D=135-198 F DNA-binding transcription factor activity, RNA polymerase II-specific
A/D=135-198 F HMG box domain binding
A/D=135-198 F RNA polymerase II cis-regulatory region sequence-specific DNA binding
A/D=135-198 F sequence-specific DNA binding
A/D=135-198 F sequence-specific double-stranded DNA binding
A/D=135-198 F transcription regulatory region sequence-specific DNA binding
A/D=135-198 P anatomical structure formation involved in morphogenesis
A/D=135-198 P BMP signaling pathway
A/D=135-198 P cell differentiation
A/D=135-198 P cell population proliferation
A/D=135-198 P cellular response to BMP stimulus
A/D=135-198 P embryonic limb morphogenesis
A/D=135-198 P endochondral ossification
A/D=135-198 P epithelial cell differentiation
A/D=135-198 P face morphogenesis
A/D=135-198 P inner ear morphogenesis
A/D=135-198 P interneuron axon guidance
A/D=135-198 P nervous system development
A/D=135-198 P olfactory bulb interneuron differentiation
A/D=135-198 P olfactory pit development
A/D=135-198 P osteoblast differentiation
A/D=135-198 P positive regulation of canonical Wnt signaling pathway
A/D=135-198 P positive regulation of epithelial cell proliferation
A/D=135-198 P positive regulation of transcription by RNA polymerase II
A/D=135-198 P positive regulation of transcription from RNA polymerase II promoter involved in cellular response to chemical stimulus
A/D=135-198 P positive regulation of transcription, DNA-templated
A/D=135-198 P regulation of transcription by RNA polymerase II
A/D=135-198 P roof of mouth development
A/D=135-198 P skeletal system development
Sequences
Download file with secondary structure created by Stride  
4rdu.pdb1.pdb:   [ download sequences in FASTA format ]
B (dna): 
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C (dna): 
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A (protein): 
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4rdu.pdb2.pdb:   [ download sequences in FASTA format ]
E (dna): 
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F (dna): 
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D (protein): 
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