General information
PDB ID 4UJP
Title CRYSTAL STRUCTURE OF LACTIMIDOMYCIN BOUND TO THE YEAST 80S RIBOSOME
PDB header RIBOSOME
Date 2014-07-24
Experimental method X-RAY DIFFRACTION
Resolution (A) 2.8
Kind rna
Organism SACCHAROMYCES CEREVISIAE ATCC 204508 / S288C
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CATH PDBsum HSSP PDBePISA UniProt
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Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb4ujp.pdb BCDEFGHIJKLMNOPQRSTUVWXYZabcdefghi A 0
Biounits:
4ujp.pdb1.pdb BCDEFGHIJKLMNOPQRSTUVWXYZabcdefghi A 1
Pfam domains
Name: Type: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Action:
Ribosomal_S5 Domain 1.1e-26 1 CL0196 D 76 140 A
Ribosomal_S5_C Domain 4.8e-24 1 CL0329 D 159 230 A
Ribosomal_S3_C Domain 1.3e-22 1 No_clan E 105 188 A
KH_2 Domain 0.000000000022 1 CL0007 E 20 96 A
RS4NT Domain 1.5e-19 1 No_clan F 3 39 A
S4 Domain 0.000000016 1 CL0492 F 42 90 A
Ribosomal_S7 Domain 4.4e-37 1 No_clan G 72 225 A
Ribosomal_S27 Domain 5.4e-25 1 CL0167 g 102 147 A
S4 Domain 0.0000000000033 1 CL0492 K 107 153 A
S10_plectin Domain 2.7e-43 1 No_clan L 3 95 A
Ribosomal_S17 Domain 8.4e-28 1 CL0021 M 73 141 A
Ribosomal_L7Ae Domain 1.2e-22 1 CL0101 N 26 123 A
Ribosomal_S13_N Domain 8.1e-28 1 No_clan O 2 60 A
Ribosomal_S15 Domain 0.0000000000000032 1 CL0600 O 70 149 A
Ribosomal_S19 Domain 1.9e-32 1 No_clan Q 43 128 A
Ribosomal_S8 Domain 5e-24 1 No_clan X 5 130 A
Ribosomal_S25 Family 7.5e-27 1 CL0123 a 36 104 A
Ribosomal_S26e Family 3.6e-48 1 No_clan b 2 98 A
Ribosomal_S2 Family 0.000000000000029 1 CL0067 B 111 183 A
Ribosomal_S2 Family 0.00000000094 1 CL0067 B 17 116 A
Ribosomal_S3Ae Family 7.6e-88 1 No_clan C 20 221 A
Ribosomal_S27e Family 5e-30 1 CL0167 c 28 82 A
Ribosomal_S28e Family 1.2e-32 1 CL0021 d 5 66 A
Ribosomal_S14 Family 0.0000000000000013 1 No_clan e 6 56 A
Ribosomal_S4e Family 2.1e-38 1 No_clan F 95 169 A
Ribosomal_S30 Family 8.2e-29 1 No_clan f 3 61 A
40S_S4_C Family 3.8e-26 1 No_clan F 212 259 A
KOW Family 0.0000038 1 CL0107 F 177 211 A
Ribosomal_S6e Family 6e-58 1 No_clan H 1 126 A
Ribosomal_S7e Family 6.2e-80 1 CL0652 I 5 187 A
HABP4_PAI-RBP1 Family 0.0000083 1 No_clan i 87 176 A
Ribosomal_S8e Family 1.8e-59 1 No_clan J 2 184 A
Ribosomal_S17_N Family 8.4e-32 1 No_clan M 8 71 A
Ribosomal_S11 Family 3.2e-46 1 CL0267 P 15 133 A
Ribosomal_S9 Family 1.3e-32 1 CL0329 R 11 143 A
Ribosomal_S17e Family 3.2e-54 1 No_clan S 2 122 A
Ribosomal_S13 Family 5e-57 1 CL0303 T 16 144 A
Ribosomal_S19e Family 8.8e-54 1 CL0123 U 5 142 A
Ribosomal_S10 Family 6.7e-25 1 No_clan V 23 117 A
Ribosomal_S21e Family 5.8e-40 1 No_clan W 1 80 A
Ribosom_S12_S23 Family 2.1e-51 1 CL0021 Y 31 144 A
Ribosomal_S24e Family 6.5e-35 1 No_clan Z 24 102 A
WD40 Repeat 0.0000003 1 CL0186 h 55 93 A
WD40 Repeat 0.0000018 1 CL0186 h 186 224 A
WD40 Repeat 0.0000091 1 CL0186 h 97 135 A
SCOP domains
No SCOP domains
GO terms
No GO terms
Sequences
Download file with secondary structure created by Stride  
4ujp.pdb1.pdb:   [ download sequences in FASTA format ]
a (protein): 
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B (protein): 
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c (protein): 
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d (protein): 
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E (protein): 
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F (protein): 
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g (protein): 
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H (protein): 
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I (protein): 
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J (protein): 
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K (protein): 
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L (protein): 
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M (protein): 
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N (protein): 
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O (protein): 
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P (protein): 
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Q (protein): 
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R (protein): 
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S (protein): 
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T (protein): 
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U (protein): 
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V (protein): 
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W (protein): 
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X (protein): 
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Y (protein): 
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Z (protein): 
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