NPIDB: 4WFA structure

General information

PDB ID

4WFA

Title

THE CRYSTAL STRUCTURE OF THE LARGE RIBOSOMAL SUBUNIT OF STAPHYLOCOCCUS AUREUS IN COMPLEX WITH LINEZOLID

PDB header

RIBOSOME

Date

2014-09-14

Experimental method

X-RAY DIFFRACTION

Resolution (A)

3.39

Kind

rna

Organism

STAPHYLOCOCCUS AUREUS SUBSP. AUREUS NCTC 8325, STAPHYLOCOCCUS AUREUS (STRAIN NCTC 8325), STAPHYLOCOCCUS AUREUS (STRAIN USA300)


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PDB	PDBe	MMDB	Jena	OCA
CATH	PDBsum	HSSP	PDBePISA	UniProt
ProteopediA	BIPA
	PRIDB

Composition of PDB entry and biounits
File:	Protein chains:	DNA chains:	RNA chains:	No. of models:	Action:

PDB entry:

pdb4wfa.pdb	ABCDEGHIJKLMNOPQRSTUVWZ234		XY	0

Biounits:

4wfa.pdb1.pdb	ABCDEGHIJKLMNOPQRSTUVWZ234		XY	1

Pfam domains
Name:	Type:	Domain:	E-value:	Significance:	Clan:	Prot. chain:	Start res.:	End res.:	Nuc. chains:	Int. mode:	Action:

Ribosomal_L36	Domain	Q2FW29_1-37	1.2e-19	1	No_clan	4	1	37	X
Ribosomal_L2_C	Domain	P60430_125-251	3e-57	1	CL0107	A	125	251	X
Ribosomal_L2	Domain	P60430_42-118	5.7e-33	1	CL0021	A	42	118	X
Ribosomal_L5	Domain	Q2FW18_24-80	6.7e-29	1	CL0652	D	24	80	XY
Ribosomal_L5_C	Domain	Q2FW18_84-170	3.5e-26	1	No_clan	D	84	170	XY
Ribosomal_L6	Domain	Q2FW21_90-165	2.9e-20	1	No_clan	E	90	165	X
Ribosomal_L6	Domain	Q2FW21_18-82	3.7e-19	1	No_clan	E	17	82	X
Ribosomal_L14	Domain	Q2FW16_1-122	1.3e-53	1	No_clan	H	1	122	X
Ribosomal_L22	Domain	Q2FW11_5-108	1e-35	1	No_clan	P	5	108	X
Ribosomal_L25p	Domain	Q2FJE0_4-91	1.5e-22	1	No_clan	S	4	91	XY
Ribosomal_TL5_C	Domain	Q2FJE0_99-169	2e-21	1	No_clan	S	99	169
Ribosomal_L30	Domain	P0A0G2_4-54	5.7e-22	1	No_clan	W	4	54	XY
Ribosomal_L34	Family	Q2FUQ0_2-45	7.1e-23	1	No_clan	2	2	45	X
Ribosomal_L35p	Family	Q2FXQ0_2-61	2.9e-24	1	No_clan	3	2	61	X
Ribosomal_L3	Family	Q2FW06_90-216	5.1e-15	1	CL0575	B	87	194	X
Ribosomal_L4	Family	Q2FW07_17-201	2.3e-70	1	No_clan	C	17	201	X
Ribosomal_L13	Family	Q2FW38_15-139	7.2e-54	1	No_clan	G	15	139	X
Ribosomal_L27A	Family	P0A0F8_27-131	6.4e-33	1	CL0588	I	27	131	X
Ribosomal_L16	Family	Q2FW13_4-132	1.3e-51	1	No_clan	J	4	132	XY
Ribosomal_L17	Family	Q2FW33_16-122	6.9e-37	1	No_clan	K	16	122	X
Ribosomal_L18p	Family	Q2FW22_5-110	1.2e-41	1	CL0267	L	5	111	XY
Ribosomal_L19	Family	Q2FZ42_5-110	1.1e-50	1	CL0107	M	5	110	X
Ribosomal_L20	Family	Q2FXQ1_3-109	2.1e-49	1	No_clan	N	3	109	X
Ribosomal_L21p	Family	Q2FXS8_1-100	2.8e-41	1	No_clan	O	1	100	X
Ribosomal_L23	Family	Q2FW08_5-89	3.9e-32	1	No_clan	Q	5	89	X
ribosomal_L24	Family	Q2FW17_38-101	7.1e-31	1	No_clan	R	38	101	X
KOW	Family	Q2FW17_5-36	1.4e-08	1	CL0107	R	5	36	X
Ribosomal_L27	Family	Q2FXT0_19-89	7.6e-31	1	No_clan	T	19	89	X
Ribosomal_L28	Family	Q2FZ60_10-55	7.6e-15	1	No_clan	U	12	55	X
Ribosomal_L29	Family	Q2FW14_4-60	2.3e-24	1	CL0346	V	4	60	X
Ribosomal_L32p	Family	Q2FZF1_2-44	3.4e-20	1	CL0167	Z	2	45	X

SCOP domains
No SCOP domains

GO terms
No GO terms

Sequences

Download file with secondary structure created by Stride

4wfa.pdb1.pdb: [ download sequences in FASTA format ]

2 (protein):