NPIDB: 4XLN structure

General information

PDB ID

4XLN

Title

CRYSTAL STRUCTURE OF T. AQUATICUS TRANSCRIPTION INITIATION COMPLEX CONTAINING BUBBLE PROMOTER AND RNA

PDB header

TRANSCRIPTION/DNA/RNA

Date

2015-01-13

Experimental method

X-RAY DIFFRACTION

Resolution (A)

Kind

hybrid

Organism

THERMUS AQUATICUS, SYNTHETIC CONSTRUCT


Download complex	View in Jmol

Quick Links

PDB	PDBe	MMDB	Jena	OCA
CATH	PDBsum	HSSP	PDBePISA	UniProt
ProteopediA	BIPA
	PRIDB

Composition of PDB entry and biounits
File:	Protein chains:	DNA chains:	RNA chains:	No. of models:	Action:

PDB entry:

pdb4xln.pdb	ABCDEFGHIJKL	OPRS	QT	0

Biounits:

4xln.pdb1.pdb	ABCDEF	OP	Q	1
4xln.pdb2.pdb	GHIJKL	RS	T	1

Pfam domains
Name:	Type:	Domain:	E-value:	Significance:	Clan:	Prot. chain:	Start res.:	End res.:	Nuc. chains:	Int. mode:	Action:

RNA_pol_A_bac	Domain	Q9KWU8_52-179	3.7e-26	1	No_clan	A	52	180
RNA_pol_L	Domain	Q9KWU8_26-222	2.8e-24	1	CL0509	A	26	222
RNA_pol_A_bac	Domain	Q9KWU8_52-179	3.7e-26	1	No_clan	B	52	180
RNA_pol_L	Domain	Q9KWU8_26-222	2.8e-24	1	CL0509	B	26	222
RNA_pol_Rpb2_6	Domain	Q9KWU7_596-1026	8.4e-149	1	CL0410	C	596	1026
RNA_pol_Rpb2_3	Domain	Q9KWU7_393-461	4.1e-29	1	No_clan	C	393	461	OP	H-Mj
RNA_pol_Rpb2_7	Domain	Q9KWU7_1028-1104	2e-26	1	No_clan	C	1028	1104
RNA_pol_Rpb2_45	Domain	Q9KWU7_471-535	7.4e-24	1	No_clan	C	471	535
RNA_pol_Rpb2_2	Domain	Q9KWU7_142-334	0.000000000043	1	No_clan	C	142	334	O
RNA_pol_Rpb1_1	Domain	Q9KWU6_423-618	2.8e-46	1	No_clan	D	423	618
RNA_pol_Rpb1_2	Domain	Q9KWU6_620-765	1.2e-35	1	No_clan	D	620	765
RNA_pol_Rpb1_1	Domain	Q9KWU6_2-192	1.4e-33	1	No_clan	D	2	192
RNA_pol_Rpb1_5	Domain	Q9KWU6_1064-1291	1.4e-32	1	No_clan	D	1064	1254	P
RNA_pol_Rpb1_3	Domain	Q9KWU6_768-954	7.8e-30	1	No_clan	D	768	954
RNA_pol_Rpb1_4	Domain	Q9KWU6_983-1069	0.0000000000000062	1	No_clan	D	983	1068
RNA_pol_Rpb1_5	Domain	Q9KWU6_1269-1432	0.00000000000026	1	No_clan	D	1261	1432
Sigma70_r2	Domain	Q9EZJ8_202-272	3e-20	1	CL0123	F	202	272	OP	H-Bb H-Mj H-Mn
Sigma70_r4	Domain	Q9EZJ8_372-425	1.8e-18	1	CL0123	F	372	425	OP	H-Bb H-Mj L-Bb L-Mj
RNA_pol_A_bac	Domain	Q9KWU8_52-179	3.7e-26	1	No_clan	G	52	180
RNA_pol_L	Domain	Q9KWU8_26-222	2.8e-24	1	CL0509	G	26	222
RNA_pol_A_bac	Domain	Q9KWU8_52-179	3.7e-26	1	No_clan	H	52	180
RNA_pol_L	Domain	Q9KWU8_26-222	2.8e-24	1	CL0509	H	26	222
RNA_pol_Rpb2_6	Domain	Q9KWU7_596-1026	8.4e-149	1	CL0410	I	596	1026
RNA_pol_Rpb2_3	Domain	Q9KWU7_393-461	4.1e-29	1	No_clan	I	393	461	RS	H-Mj L-Mj
RNA_pol_Rpb2_7	Domain	Q9KWU7_1028-1104	2e-26	1	No_clan	I	1028	1104
RNA_pol_Rpb2_45	Domain	Q9KWU7_471-535	7.4e-24	1	No_clan	I	471	535
RNA_pol_Rpb2_2	Domain	Q9KWU7_142-334	0.000000000043	1	No_clan	I	142	334	R
RNA_pol_Rpb1_1	Domain		2.9e-82	1	No_clan	J	2	618
RNA_pol_Rpb1_2	Domain	Q9KWU6_620-765	1.1e-35	1	No_clan	J	620	765
RNA_pol_Rpb1_5	Domain	Q9KWU6_1064-1291	1.2e-32	1	No_clan	J	1064	1254	S
RNA_pol_Rpb1_3	Domain	Q9KWU6_768-954	6.9e-30	1	No_clan	J	768	954
RNA_pol_Rpb1_4	Domain	Q9KWU6_983-1069	0.0000000000000056	1	No_clan	J	983	1068
RNA_pol_Rpb1_5	Domain	Q9KWU6_1269-1432	0.00000000000024	1	No_clan	J	1261	1432
Sigma70_r2	Domain	Q9EZJ8_202-272	3e-20	1	CL0123	L	202	272	R	H-Bb H-Mj H-Mn
Sigma70_r4	Domain	Q9EZJ8_372-425	1.8e-18	1	CL0123	L	372	425	RS	H-Bb H-Mj L-Bb L-Mj
RNA_pol_Rpb2_1	Family	Q9KWU7_17-380	2.9e-40	1	No_clan	C	17	380	OP
RNA_pol_Rpb6	Family	Q9EVV4_8-75	0.00000052	1	No_clan	E	8	75
Sigma70_r3	Family	Q9EZJ8_281-360	3.8e-26	1	CL0123	F	281	360	PQ
Sigma70_r1_2	Family	Q9EZJ8_94-127	4e-16	1	No_clan	F	94	127	O
RNA_pol_Rpb2_1	Family	Q9KWU7_17-380	2.9e-40	1	No_clan	I	17	380	R
RNA_pol_Rpb6	Family	Q9EVV4_8-75	0.00000052	1	No_clan	K	8	75
Sigma70_r3	Family	Q9EZJ8_281-360	3.8e-26	1	CL0123	L	281	360	ST
Sigma70_r1_2	Family	Q9EZJ8_94-127	4e-16	1	No_clan	L	94	127	R

SCOP domains
No SCOP domains

GO terms
No GO terms

Sequences

Download file with secondary structure created by Stride

4xln.pdb1.pdb: [ download sequences in FASTA format ]

O (dna):