General information
PDB ID 4XLS
Title CRYSTAL STRUCTURE OF T. AQUATICUS TRANSCRIPTION INITIATION COMPLEX WITH CARD CONTAINING UPSTREAM FORK PROMOTER.
PDB header TRANSCRIPTION
Date 2015-01-13
Experimental method X-RAY DIFFRACTION
Resolution (A) 4.01
Kind dna
Organism THERMUS AQUATICUS
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CATH PDBsum HSSP PDBePISA UniProt
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Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb4xls.pdb ABCDEFGHIJKLMN OPRS 0
Biounits:
4xls.pdb1.pdb ABCDEFM OP 1
4xls.pdb2.pdb GHIJKLN RS 1
4xls.pdb3.pdb ABCDEF OP 1
4xls.pdb4.pdb GHIJKL RS 1
Pfam domains
Name: Type: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Action:
RNA_pol_A_bac Domain 3.7e-26 1 No_clan A 52 180
RNA_pol_A_bac Domain 3.7e-26 1 No_clan A 52 180
RNA_pol_L Domain 2.8e-24 1 CL0509 A 26 222
RNA_pol_L Domain 2.8e-24 1 CL0509 A 26 222
RNA_pol_A_bac Domain 3.7e-26 1 No_clan B 52 180
RNA_pol_A_bac Domain 3.7e-26 1 No_clan B 52 180
RNA_pol_L Domain 2.8e-24 1 CL0509 B 26 222
RNA_pol_L Domain 2.8e-24 1 CL0509 B 26 222
RNA_pol_Rpb2_6 Domain 8.4e-149 1 CL0410 C 596 1026
RNA_pol_Rpb2_6 Domain 8.4e-149 1 CL0410 C 596 1026
RNA_pol_Rpb2_3 Domain 4.1e-29 1 No_clan C 393 461
RNA_pol_Rpb2_3 Domain 4.1e-29 1 No_clan C 393 461
RNA_pol_Rpb2_7 Domain 2e-26 1 No_clan C 1028 1104
RNA_pol_Rpb2_7 Domain 2e-26 1 No_clan C 1028 1104
RNA_pol_Rpb2_45 Domain 7.4e-24 1 No_clan C 471 535
RNA_pol_Rpb2_45 Domain 7.4e-24 1 No_clan C 471 535
RNA_pol_Rpb2_2 Domain 0.000000000043 1 No_clan C 142 334
RNA_pol_Rpb2_2 Domain 0.000000000043 1 No_clan C 142 334
RNA_pol_Rpb1_1 Domain 2.8e-46 1 No_clan D 423 618
RNA_pol_Rpb1_1 Domain 2.8e-46 1 No_clan D 423 618
RNA_pol_Rpb1_2 Domain 1.2e-35 1 No_clan D 620 765
RNA_pol_Rpb1_2 Domain 1.2e-35 1 No_clan D 620 765
RNA_pol_Rpb1_1 Domain 1.4e-33 1 No_clan D 2 192 O
RNA_pol_Rpb1_1 Domain 1.4e-33 1 No_clan D 2 192 O
RNA_pol_Rpb1_5 Domain 1.4e-32 1 No_clan D 1064 1254
RNA_pol_Rpb1_5 Domain 1.4e-32 1 No_clan D 1064 1254
RNA_pol_Rpb1_3 Domain 7.8e-30 1 No_clan D 768 954
RNA_pol_Rpb1_3 Domain 7.8e-30 1 No_clan D 768 954
RNA_pol_Rpb1_4 Domain 0.0000000000000062 1 No_clan D 983 1068
RNA_pol_Rpb1_4 Domain 0.0000000000000062 1 No_clan D 983 1068
RNA_pol_Rpb1_5 Domain 0.00000000000026 1 No_clan D 1261 1432
RNA_pol_Rpb1_5 Domain 0.00000000000026 1 No_clan D 1261 1432
Sigma70_r2 Domain 3e-20 1 CL0123 F 202 272 O
Sigma70_r2 Domain 3e-20 1 CL0123 F 202 272 O
Sigma70_r4 Domain 1.8e-18 1 CL0123 F 372 425 PO
Sigma70_r4 Domain 1.8e-18 1 CL0123 F 372 425 PO
RNA_pol_A_bac Domain 3.7e-26 1 No_clan G 52 180
RNA_pol_A_bac Domain 3.7e-26 1 No_clan G 52 180
RNA_pol_L Domain 2.8e-24 1 CL0509 G 26 222
RNA_pol_L Domain 2.8e-24 1 CL0509 G 26 222
RNA_pol_A_bac Domain 3.7e-26 1 No_clan H 52 180
RNA_pol_A_bac Domain 3.7e-26 1 No_clan H 52 180
RNA_pol_L Domain 2.8e-24 1 CL0509 H 26 222
RNA_pol_L Domain 2.8e-24 1 CL0509 H 26 222
RNA_pol_Rpb2_6 Domain 8.4e-149 1 CL0410 I 596 1026
RNA_pol_Rpb2_6 Domain 8.4e-149 1 CL0410 I 596 1026
RNA_pol_Rpb2_3 Domain 4.1e-29 1 No_clan I 393 461
RNA_pol_Rpb2_3 Domain 4.1e-29 1 No_clan I 393 461
RNA_pol_Rpb2_7 Domain 2e-26 1 No_clan I 1028 1104
RNA_pol_Rpb2_7 Domain 2e-26 1 No_clan I 1028 1104
RNA_pol_Rpb2_45 Domain 7.4e-24 1 No_clan I 471 535
RNA_pol_Rpb2_45 Domain 7.4e-24 1 No_clan I 471 535
RNA_pol_Rpb2_2 Domain 0.000000000043 1 No_clan I 142 334
RNA_pol_Rpb2_2 Domain 0.000000000043 1 No_clan I 142 334
RNA_pol_Rpb1_1 Domain 2.9e-82 1 No_clan J 2 618 R
RNA_pol_Rpb1_1 Domain 2.9e-82 1 No_clan J 2 618 R
RNA_pol_Rpb1_2 Domain 1.1e-35 1 No_clan J 620 765
RNA_pol_Rpb1_2 Domain 1.1e-35 1 No_clan J 620 765
RNA_pol_Rpb1_5 Domain 1.2e-32 1 No_clan J 1064 1254
RNA_pol_Rpb1_5 Domain 1.2e-32 1 No_clan J 1064 1254
RNA_pol_Rpb1_3 Domain 6.9e-30 1 No_clan J 768 954
RNA_pol_Rpb1_3 Domain 6.9e-30 1 No_clan J 768 954
RNA_pol_Rpb1_4 Domain 0.0000000000000056 1 No_clan J 983 1068
RNA_pol_Rpb1_4 Domain 0.0000000000000056 1 No_clan J 983 1068
RNA_pol_Rpb1_5 Domain 0.00000000000024 1 No_clan J 1261 1432
RNA_pol_Rpb1_5 Domain 0.00000000000024 1 No_clan J 1261 1432
Sigma70_r2 Domain 3e-20 1 CL0123 L 202 272 R
Sigma70_r2 Domain 3e-20 1 CL0123 L 202 272 R
Sigma70_r4 Domain 1.8e-18 1 CL0123 L 372 425 RS
Sigma70_r4 Domain 1.8e-18 1 CL0123 L 372 425 RS
RNA_pol_Rpb2_1 Family 2.9e-40 1 No_clan C 17 380
RNA_pol_Rpb2_1 Family 2.9e-40 1 No_clan C 17 380
RNA_pol_Rpb6 Family 0.00000052 1 No_clan E 8 75
RNA_pol_Rpb6 Family 0.00000052 1 No_clan E 8 75
Sigma70_r3 Family 3.8e-26 1 CL0123 F 281 360 P
Sigma70_r3 Family 3.8e-26 1 CL0123 F 281 360 P
Sigma70_r1_2 Family 0.0000000000000058 1 No_clan F 95 127 O
Sigma70_r1_2 Family 0.0000000000000058 1 No_clan F 95 127 O
RNA_pol_Rpb2_1 Family 2.9e-40 1 No_clan I 17 380
RNA_pol_Rpb2_1 Family 2.9e-40 1 No_clan I 17 380
RNA_pol_Rpb6 Family 0.00000052 1 No_clan K 8 75
RNA_pol_Rpb6 Family 0.00000052 1 No_clan K 8 75
Sigma70_r3 Family 3.8e-26 1 CL0123 L 281 360
Sigma70_r3 Family 3.8e-26 1 CL0123 L 281 360
Sigma70_r1_2 Family 0.0000000000000058 1 No_clan L 95 127 R
Sigma70_r1_2 Family 0.0000000000000058 1 No_clan L 95 127 R
CarD_CdnL_TRCF Family 0.00000000000026 1 No_clan M 4 112 O
CarD_CdnL_TRCF Family 0.00000000000026 1 No_clan N 4 112 R
SCOP domains
No SCOP domains
GO terms
No GO terms
Sequences
Download file with secondary structure created by Stride  
4xls.pdb1.pdb:   [ download sequences in FASTA format ]
O (dna): 
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P (dna): 
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A (protein): 
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B (protein): 
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C (protein): 
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D (protein): 
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E (protein): 
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F (protein): 
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M (protein): 
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4xls.pdb2.pdb:   [ download sequences in FASTA format ]
R (dna): 
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S (dna): 
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G (protein): 
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H (protein): 
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I (protein): 
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J (protein): 
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K (protein): 
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L (protein): 
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N (protein): 
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4xls.pdb3.pdb:   [ download sequences in FASTA format ]
O (dna): 
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P (dna): 
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A (protein): 
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B (protein): 
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C (protein): 
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D (protein): 
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E (protein): 
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F (protein): 
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4xls.pdb4.pdb:   [ download sequences in FASTA format ]
R (dna): 
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S (dna): 
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G (protein): 
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H (protein): 
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I (protein): 
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J (protein): 
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K (protein): 
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L (protein): 
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