General information
PDB ID 4YIG
Title VACCINIA VIRUS D4/A20(1-50) IN COMPLEX WITH DSDNA CONTAINING AN ABASIC SITE AND FREE URACYL
PDB header HYDROLASE
Date 2015-03-02
Experimental method X-RAY DIFFRACTION
Resolution (A) 2.7
Kind dna
Organism VACCINIA VIRUS (STRAIN COPENHAGEN), SYNTHETIC CONSTRUCT
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb4yig.pdb ABEFIJ CDGHKL 0
Biounits:
4yig.pdb1.pdb AB CD 1
4yig.pdb2.pdb EF GH 1
4yig.pdb3.pdb IJ KL 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
UDG Domain P20536_57-208 5e-05 0 No_clan A 54 205 CD  H-Mn L-Bb L-Mj L-Mn 
UDG Domain P20536_57-208 5e-05 0 No_clan E 54 205 GH  L-Bb L-Mj L-Mn 
UDG Domain P20536_57-208 5e-05 0 No_clan I 54 205 KL  L-Bb L-Mj L-Mn 
Chordopox_A20R Family P20995_3-50 2.3e-19 1 No_clan B 1 50   
Chordopox_A20R Family P20995_3-50 2.3e-19 1 No_clan F 1 50   
Chordopox_A20R Family P20995_3-50 2.3e-19 1 No_clan J 1 50   
SCOP domains
No SCOP domains
GO terms
Protein chains: GO type: GO description:
A/E/I=1-218 F DNA binding
A/E/I=1-218 F hydrolase activity, hydrolyzing N-glycosyl compounds
A/E/I=1-218 P DNA repair
A/E/I=1-218 P viral DNA genome replication
B/F/J=3-50 P DNA replication
B/F/J=3-50 P viral DNA genome replication
Sequences
Download file with secondary structure created by Stride  
4yig.pdb1.pdb:   [ download sequences in FASTA format ]
C (dna): 
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D (dna): 
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A (protein): 
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B (protein): 
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4yig.pdb2.pdb:   [ download sequences in FASTA format ]
G (dna): 
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H (dna): 
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E (protein): 
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F (protein): 
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4yig.pdb3.pdb:   [ download sequences in FASTA format ]
K (dna): 
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L (dna): 
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I (protein): 
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J (protein): 
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