General information
PDB ID 4YPR
Title CRYSTAL STRUCTURE OF D144N MUTY BOUND TO ITS ANTI-SUBSTRATE
PDB header HYDROLASE/DNA
Date 2015-03-13
Experimental method X-RAY DIFFRACTION
Resolution (A) 2.59
Kind dna
Organism GEOBACILLUS STEAROTHERMOPHILUS, SYNTHETIC CONSTRUCT
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb4ypr.pdb AB CDEF 0
Biounits:
4ypr.pdb1.pdb A CD 1
4ypr.pdb2.pdb B EF 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
NUDIX_4 Domain P83847_240-354 1.2e-22 1 CL0261 A 240 354 D  H-Bb S-Bb S-Mj L-Bb L-Mj 
HhH-GPD Domain P83847_41-176 8.4e-19 1 CL0198 A 41 177 CD  H-Bb H-Mj L-Bb L-Mj L-Mn 
NUDIX_4 Domain P83847_240-354 8.1e-22 1 CL0261 B 240 354 F  H-Bb S-Bb S-Mj L-Bb L-Mj 
HhH-GPD Domain P83847_41-176 8.1e-19 1 CL0198 B 41 177 EF  H-Bb L-Bb L-Mj L-Mn 
HHH Motif P83847_105-134 2.6e-06 1 CL0198 A 105 134 C  H-Bb L-Bb 
HHH Motif P83847_105-134 2.6e-06 1 CL0198 B 105 134 E  H-Bb L-Bb 
SCOP domains
No SCOP domains
GO terms
Protein chains: GO type: GO description:
A/B=1-365 F 4 iron, 4 sulfur cluster binding
A/B=1-365 F DNA binding
A/B=1-365 F DNA N-glycosylase activity
A/B=1-365 F metal ion binding
A/B=1-365 P base-excision repair
Sequences
Download file with secondary structure created by Stride  
4ypr.pdb1.pdb:   [ download sequences in FASTA format ]
C (dna): 
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D (dna): 
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A (protein): 
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4ypr.pdb2.pdb:   [ download sequences in FASTA format ]
E (dna): 
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F (dna): 
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B (protein): 
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