General information
PDB ID 4ZUX
Title SAGA DUB MODULE UBP8/SGF11/SUS1/SGF73 BOUND TO UBIQITINATED NUCLEOSOME
PDB header HYDROLASE/DNA
Date 2015-05-17
Experimental method X-RAY DIFFRACTION
Resolution (A) 3.82
Kind dna
Organism XENOPUS LAEVIS, SYNTHETIC CONSTRUCT, SACCHAROMYCES CEREVISIAE (STRAIN YJM789), HOMO SAPIENS
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb4zux.pdb ABCDEFGHKLMNOPQRUVWXYZabcdefghijklmn IJST 0
Biounits:
4zux.pdb1.pdb ABCDEFGHUVWXYZabcd IJ 1
4zux.pdb2.pdb KLMNOPQRefghijklmn ST 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Histone Domain P84233_39-132 6.9e-46 1 CL0012 A 38 131 IJ   
CENP-T_C Domain P62799_18-99 0.0000000095 1 CL0012 B 24 98 IJ   
ubiquitin Domain P0CG47_155-226 1.5e-35 1 CL0072 c 3 74 IJ   
Histone Domain P06897_19-91 0.000000000000001 1 CL0012 C 16 90 IJ   
Histone Domain P02281_33-102 6.3e-22 1 CL0012 D 28 98 IJ   
Histone Domain P84233_39-132 2.2e-45 1 CL0012 E 39 131 IJ   
zf-UBP Domain 0.000000000028 1 CL0229 e 46 108
CENP-T_C Domain P62799_26-99 0.0000000085 1 CL0012 F 26 98 IJ   
Histone Domain P06897_19-91 7.8e-16 1 CL0012 G 14 90 IJ   
ubiquitin Domain P0CG47_155-226 1.5e-35 1 CL0072 h 3 74   
Histone Domain P02281_33-102 9.6e-22 1 CL0012 H 29 98 IJ   
zf-UBP Domain P50102_46-108 0.00000000018 1 CL0229 j 43 108   
Histone Domain P84233_39-132 6.9e-46 1 CL0012 K 38 131 ST   
CENP-T_C Domain P62799_18-99 0.0000000095 1 CL0012 L 24 98 ST   
ubiquitin Domain P0CG47_155-226 1.5e-35 1 CL0072 m 3 74 ST   
Histone Domain P06897_19-91 0.000000000000001 1 CL0012 M 16 90 ST   
Histone Domain P02281_33-102 6.3e-22 1 CL0012 N 28 98 ST   
Histone Domain P84233_39-132 2.2e-45 1 CL0012 O 39 131 ST   
CENP-T_C Domain P62799_26-99 0.0000000085 1 CL0012 P 26 98 ST   
Histone Domain P06897_19-91 7.8e-16 1 CL0012 Q 14 90 ST   
Histone Domain P02281_33-102 9.6e-22 1 CL0012 R 29 98 ST   
zf-UBP Domain P50102_46-108 0.000000000028 1 CL0229 U 46 108   
ubiquitin Domain P0CG47_155-226 1.5e-35 1 CL0072 X 3 74   
zf-UBP Domain P50102_46-108 0.000000000028 1 CL0229 Z 46 108   
EnY2 Family Q6WNK7_9-89 1.3e-20 1 No_clan a 9 89 IJ   
Sgf11 Family 0.000000000000023 1 CL0361 b 67 95 J
Histone_H2A_C Family P06897_92-120 2e-17 1 No_clan C 91 118   
UCH Family P50102_137-465 2e-56 1 CL0125 e 137 465 S   
EnY2 Family 6.1e-21 1 No_clan f 10 89
Histone_H2A_C Family P06897_92-120 2e-17 1 No_clan G 91 118   
Sgf11 Family A6ZWK1_67-95 0.000000000000024 1 CL0361 g 67 95   
UCH Family P50102_137-465 5.1e-56 1 CL0125 j 137 465 T   
EnY2 Family Q6WNK7_9-89 1e-24 1 No_clan k 9 89 ST   
Sgf11 Family 0.000000000000025 1 CL0361 l 67 95 T
Histone_H2A_C Family P06897_92-120 2e-17 1 No_clan M 91 118   
Histone_H2A_C Family P06897_92-120 2e-17 1 No_clan Q 91 118   
UCH Family P50102_137-465 2.3e-55 1 CL0125 U 137 465 I   
EnY2 Family Q6WNK7_9-89 1.2e-24 1 No_clan V 9 89   
Sgf11 Family A6ZWK1_67-95 0.000000000000024 1 CL0361 W 67 95   
UCH Family P50102_137-465 1e-56 1 CL0125 Z 137 465   
SCOP domains
No SCOP domains
GO terms
No GO terms
Sequences
Download file with secondary structure created by Stride  
4zux.pdb1.pdb:   [ download sequences in FASTA format ]
I (dna): 
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J (dna): 
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A (protein): 
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B (protein): 
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c (protein): 
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D (protein): 
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E (protein): 
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F (protein): 
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G (protein): 
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H (protein): 
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U (protein): 
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V (protein): 
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W (protein): 
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X (protein): 
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Y (protein): 
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Z (protein): 
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4zux.pdb2.pdb:   [ download sequences in FASTA format ]
S (dna): 
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T (dna): 
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e (protein): 
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f (protein): 
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g (protein): 
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h (protein): 
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i (protein): 
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j (protein): 
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K (protein): 
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L (protein): 
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m (protein): 
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N (protein): 
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O (protein): 
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P (protein): 
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Q (protein): 
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R (protein): 
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