General information
PDB ID 5FLM
Title STRUCTURE OF TRANSCRIBING MAMMALIAN RNA POLYMERASE II
PDB header TRANSCRIPTION
Date 2015-10-26
Experimental method ELECTRON MICROSCOPY
Resolution (A) 3.4
Kind hybrid
Organism BOS TAURUS, SYNTHETIC CONSTRUCT
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
PRIDB
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb5flm.pdb ABCDEFGHIJKL NT P 0
Biounits:
5flm.pdb1.pdb ABCDEFGHIJKL NT P 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
RNA_pol_Rpb1_1 Domain G3MZY8_15-354 2.4e-106 1 No_clan A 15 354 PT   
RNA_pol_Rpb1_5 Domain G3MZY8_830-1428 6.8e-94 1 No_clan A 830 1427 NT  H-Bb 
RNA_pol_Rpb1_2 Domain G3MZY8_356-521 1.9e-74 1 No_clan A 356 521 PT   
RNA_pol_Rpb1_6 Domain G3MZY8_896-1079 1.5e-67 1 No_clan A 896 1079   
RNA_pol_Rpb1_7 Domain G3MZY8_1164-1299 9.4e-53 1 No_clan A 1164 1299   
RNA_pol_Rpb1_3 Domain G3MZY8_524-692 4.9e-50 1 No_clan A 524 692   
RNA_pol_Rpb1_4 Domain G3MZY8_716-823 5.3e-38 1 No_clan A 716 823   
RNA_pol_Rpb2_6 Domain A5PJW8_707-1080 1.5e-123 1 CL0410 B 707 1080 PT   
RNA_pol_Rpb2_2 Domain A5PJW8_201-394 7.9e-56 1 No_clan B 201 394   
RNA_pol_Rpb2_7 Domain A5PJW8_1082-1174 6.8e-34 1 No_clan B 1082 1174 T   
RNA_pol_Rpb2_4 Domain A5PJW8_567-629 5.1e-24 1 No_clan B 567 629   
RNA_pol_Rpb2_3 Domain A5PJW8_468-532 1.5e-23 1 No_clan B 468 532 P   
RNA_pol_Rpb2_5 Domain A5PJW8_653-700 1.2e-18 1 No_clan B 653 700   
RNA_pol_A_bac Domain Q3T0Q3_50-177 1.2e-40 1 No_clan C 50 177   
RNA_pol_L Domain Q3T0Q3_20-256 1.5e-15 1 CL0509 C 20 256   
RNA_pol_Rpb5_C Domain Q2T9T3_137-209 1.3e-35 1 No_clan E 137 209   
RNA_pol_Rpb5_N Domain Q2T9T3_4-94 9.9e-34 1 CL0236 E 4 94   
S1 Domain Q5E9B8_78-161 1.3e-20 1 CL0021 G 78 161   
SHS2_Rpb7-N Domain Q5E9B8_8-77 6.5e-15 1 CL0319 G 8 77   
RNA_POL_M_15KD Domain Q32P73_14-51 3.2e-17 1 CL0167 I 14 51   
TFIIS_C Domain Q32P73_84-124 7.7e-12 1 CL0167 I 84 124   
RNA_pol_N Domain Q32P78_1-59 6.7e-34 1 No_clan J 1 59   
RNA_pol_L_2 Domain Q32P79_30-104 2.7e-28 1 CL0509 K 30 104   
DNA_RNApol_7kD Domain Q3ZBC0_17-48 1.1e-17 1 CL0167 L 17 48   
RNA_pol_Rpb2_1 Family A5PJW8_38-442 3.2e-65 1 No_clan B 38 442 T   
RNA_pol_Rpb4 Family Q1JQ91_31-138 2.4e-25 1 CL0426 D 31 138   
RNA_pol_Rpb6 Family Q32PE0_51-104 2.3e-16 1 No_clan F 51 104   
RNA_pol_Rpb8 Family F2Z4H3_7-147 2.5e-54 1 CL0021 H 7 147   
SCOP domains
No SCOP domains
GO terms
No GO terms
Sequences
Download file with secondary structure created by Stride  
5flm.pdb1.pdb:   [ download sequences in FASTA format ]
N (dna): 
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T (dna): 
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A (protein): 
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B (protein): 
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C (protein): 
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D (protein): 
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E (protein): 
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F (protein): 
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G (protein): 
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H (protein): 
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I (protein): 
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J (protein): 
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K (protein): 
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L (protein): 
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P (rna): 
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