General information
PDB ID 5OA1
Title RNA POLYMERASE I PRE-INITIATION COMPLEX
PDB header TRANSCRIPTION
Date 2017-06-20
Experimental method ELECTRON MICROSCOPY
Resolution (A) 4.4
Kind dna
Organism SACCHAROMYCES CEREVISIAE S288C
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb5oa1.pdb ABCDEFGHIJKLMNOUVW123456789QPZYR ST 0
Biounits:
5oa1.pdb1.pdb ABCDEFGHIJKLMNOUVW123456789QPZYR ST 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
RNA_pol_Rpb1_5 Domain P10964_989-1611 9.8e-85 1 No_clan A 989 1611   
RNA_pol_Rpb1_2 Domain P10964_473-653 1.1e-70 1 No_clan A 473 653   
RNA_pol_Rpb1_3 Domain P10964_656-833 2.1e-38 1 No_clan A 656 833   
RNA_pol_Rpb1_1 Domain P10964_8-471 3.5e-27 1 No_clan A 8 471   
RNA_pol_Rpb1_4 Domain P10964_863-982 1.5e-23 1 No_clan A 863 982   
RNA_pol_Rpb2_6 Domain P22138_700-1065 1.9e-114 1 CL0410 B 700 1065 T  L-Bb 
RNA_pol_Rpb2_2 Domain P22138_210-403 4e-40 1 No_clan B 210 403   
RNA_pol_Rpb2_3 Domain P22138_486-551 1.6e-27 1 No_clan B 486 551 S   
RNA_pol_Rpa2_4 Domain P22138_593-651 5.6e-23 1 No_clan B 593 651   
RNA_pol_Rpb2_7 Domain P22138_1067-1201 2.4e-15 1 No_clan B 1067 1201   
RNA_pol_A_bac Domain P07703_83-220 4.1e-30 1 No_clan C 83 220   
RNA_pol_L Domain P07703_53-325 1.1e-20 1 CL0509 C 53 325   
RNA_pol_Rpb5_C Domain P20434_142-214 1.6e-31 1 No_clan E 142 214   
RNA_pol_Rpb5_N Domain P20434_6-100 1.1e-29 1 CL0236 E 6 100   
SHS2_Rpb7-N Domain P46669_44-125 1.3e-13 1 CL0319 G 44 125   
TFIIS_C Domain P32529_84-122 1.4e-17 1 CL0167 I 84 122   
RNA_POL_M_15KD Domain P32529_7-42 1.8e-14 1 CL0167 I 7 42   
RNA_pol_N Domain P22139_1-60 6.8e-30 1 No_clan J 1 60   
RNA_pol_L_2 Domain P28000_60-134 4e-33 1 CL0509 K 60 134   
DNA_RNApol_7kD Domain P40422_29-60 1.8e-16 1 CL0167 L 29 60   
zf-RRN7 Domain P40992_9-35 1.2e-07 1 CL0167 U 9 97   
RNA_pol_Rpb2_1 Family P22138_40-459 2.6e-48 1 No_clan B 40 459 S  H-Mj 
RNA_polI_A14 Family P50106_18-96 6.3e-10 1 No_clan D 47 100   
RNA_polI_A14 Family P50106_18-96 7.3e-10 1 No_clan D 18 81   
RNA_pol_Rpb6 Family P20435_79-132 1.2e-17 1 No_clan F 79 132   
RNA_pol_Rpb8 Family P20436_7-146 3.4e-43 1 CL0021 H 7 146   
RNA_pol_I_A49 Family Q01080_33-115 8.1e-19 1 No_clan M 33 114   
RNA_polI_A34 Family P47006_49-180 6.5e-22 1 No_clan N 44 180   
RRN3 Family 8.5e-106 1 No_clan O 248 614
RRN3 Family 1.1e-55 1 No_clan O 48 324
Rrn6 Family P32786_178-554 1.8e-49 1 No_clan V 19 534   
RNA_pol_I_TF Family Q04712_204-383 5.3e-31 1 No_clan W 204 383 S  L-Bb 
SCOP domains
No SCOP domains
GO terms
No GO terms
Sequences
Download file with secondary structure created by Stride  
5oa1.pdb1.pdb:   [ download sequences in FASTA format ]
S (dna): 
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T (dna): 
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1 (protein): 
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2 (protein): 
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3 (protein): 
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4 (protein): 
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5 (protein): 
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6 (protein): 
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7 (protein): 
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8 (protein): 
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9 (protein): 
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A (protein): 
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B (protein): 
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C (protein): 
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D (protein): 
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E (protein): 
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F (protein): 
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G (protein): 
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H (protein): 
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I (protein): 
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J (protein): 
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K (protein): 
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L (protein): 
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M (protein): 
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N (protein): 
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O (protein): 
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P (protein): 
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Q (protein): 
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R (protein): 
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U (protein): 
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V (protein): 
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W (protein): 
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Y (protein): 
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Z (protein): 
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