General information
PDB ID 5AJ3
Title STRUCTURE OF THE SMALL SUBUNIT OF THE MAMMALIAN MITORIBOSOME
PDB header RIBOSOME
Date 2015-02-20
Experimental method ELECTRON MICROSCOPY
Resolution (A) 3.6
Kind rna
Organism SUS SCROFA
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
PRIDB
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb5aj3.pdb BCEFGIJKLNOPQRTUabcdefghijkmnopsz A 0
Biounits:
5aj3.pdb1.pdb BCEFGIJKLNOPQRTUabcdefghijkmnopsz A 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
L51_S25_CI-B8 Domain A0A0M3KL55_44-95 0.000000000023 1 CL0172 c 44 95 A   
Ribosomal_S5_C Domain F1SU66_295-366 1e-20 1 CL0329 E 295 366 A   
Ribosomal_S5 Domain F1SU66_218-283 1.1e-19 1 CL0196 E 218 283 A   
Ribosomal_S6 Domain I3LEJ9_3-95 2e-18 1 No_clan F 3 95 A   
Ribosomal_S7 Domain 1.1e-39 1 No_clan G 68 234 A
CHCH Domain F1SU49_45-79 0.000000001 1 CL0351 m 45 79   
DUF1713 Domain A0A0M3KL57_128-159 0.0000000000041 1 No_clan n 128 159 A   
Ribosomal_S15 Domain 2.3e-23 1 CL0600 O 108 189 A
Ribosomal_S17 Domain F1RIU0_15-83 2e-17 1 CL0021 Q 15 83 A   
MRP-S22 Family 4.3e-107 1 No_clan a 67 308
MRP-S23 Family 1.2e-48 1 CL0172 b 2 130 A
Ribosomal_S2 Family F1S001_83-183 4.2e-21 1 CL0067 B 83 183 A   
Ribosomal_S2 Family F1S001_183-259 8.4e-19 1 CL0067 B 184 259 A   
MRP-S24 Family F1ST79_50-156 1.3e-59 1 CL0007 C 36 167 A   
MRP-S26 Family F1S8A5_28-169 2.1e-56 1 No_clan d 28 197 A   
MRP-S35 Family A0A0M3KL56_78-176 9.8e-54 1 CL0021 f 78 176 A   
DAP3 Family F1RLM4_76-371 4.7e-96 1 CL0023 g 98 393 A   
MRP-S31 Family F1RME2_279-375 3.1e-62 1 No_clan h 285 381   
Ribosomal_S9 Family A0A0M3KL59_275-397 8.6e-37 1 CL0329 I 275 397 A   
MRP-S33 Family F1S8G3_48-138 2.3e-24 1 No_clan i 6 96 A   
MRP-S34 Family F1RG19_61-187 3.8e-48 1 No_clan j 61 187 A   
Ribosomal_S10 Family F1RUU2_77-173 4.7e-25 1 No_clan J 77 173 A   
Ribosomal_S11 Family 2.8e-27 1 CL0267 K 86 195 A
MRP-S28 Family F1SG95_184-310 1.8e-19 1 CL0337 k 143 285 A   
Ribosom_S12_S23 Family A0A0M3KL52_43-139 3.5e-25 1 CL0021 L 43 139 A   
Ribosomal_S14 Family A0A0M3KL53_74-127 6e-24 1 No_clan N 74 127 A   
Ribosomal_S16 Family 1.7e-23 1 No_clan P 24 84 A
Ribosomal_S18 Family Q767K8_111-163 2.3e-16 1 No_clan p 111 163 A   
Ribosomal_S18 Family A0A0M3KL54_70-121 2e-22 1 No_clan R 70 121 A   
Ribosomal_S21 Family 1.1e-18 1 No_clan U 11 64 A
SCOP domains
No SCOP domains
GO terms
No GO terms
Sequences
Download file with secondary structure created by Stride  
5aj3.pdb1.pdb:   [ download sequences in FASTA format ]
a (protein): 
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b (protein): 
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c (protein): 
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d (protein): 
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E (protein): 
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F (protein): 
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G (protein): 
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h (protein): 
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i (protein): 
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j (protein): 
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k (protein): 
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L (protein): 
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m (protein): 
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N (protein): 
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O (protein): 
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p (protein): 
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Q (protein): 
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R (protein): 
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s (protein): 
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T (protein): 
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U (protein): 
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z (protein): 
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