General information
PDB ID 5AKF
Title THE CRYSTAL STRUCTURE OF I-DMOI Q42AK120M IN COMPLEX WITH ITS TARGET DNA NICKED IN THE CODING STRAND A AND IN THE PRESENCE OF 2MM MN
PDB header HYDROLASE
Date 2015-03-03
Experimental method X-RAY DIFFRACTION
Resolution (A) 2.45
Kind dna
Organism DESULFUROCOCCUS MOBILIS, SYNTHETIC CONSTRUCT
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
 PDIdb 
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb5akf.pdb AEI BCDFGHJKL 0
Biounits:
5akf.pdb1.pdb I JKL 1
5akf.pdb2.pdb E FGH 1
5akf.pdb3.pdb A BCD 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
LAGLIDADG_3 Domain P21505_104-178 0.00000000026 1 CL0324 A 107 178 BCD  H-Bb H-Mj S-Bb S-Mj L-Bb L-Mj 
LAGLIDADG_3 Domain P21505_8-96 0.0000034 1 CL0324 A 11 95 BCD  H-Bb S-Bb S-Mj L-Bb L-Mj 
LAGLIDADG_3 Domain P21505_104-178 0.00000000025 1 CL0324 E 107 178 FHG  H-Bb H-Mj S-Bb S-Mj L-Bb L-Mj 
LAGLIDADG_3 Domain P21505_8-96 0.0000033 1 CL0324 E 11 95 FGH  H-Bb S-Bb S-Mj L-Bb L-Mj 
LAGLIDADG_3 Domain P21505_104-178 0.00000000025 1 CL0324 I 107 178 JKL  H-Bb H-Mj S-Bb S-Mj L-Bb L-Mj 
LAGLIDADG_3 Domain P21505_8-96 0.0000033 1 CL0324 I 11 95 JKL  H-Bb S-Bb S-Mj L-Bb L-Mj 
SCOP domains
No SCOP domains
GO terms
No GO terms
Sequences
Download file with secondary structure created by Stride  
5akf.pdb1.pdb:   [ download sequences in FASTA format ]
J (dna): 
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K (dna): 
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L (dna): 
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I (protein): 
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5akf.pdb2.pdb:   [ download sequences in FASTA format ]
F (dna): 
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G (dna): 
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H (dna): 
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E (protein): 
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5akf.pdb3.pdb:   [ download sequences in FASTA format ]
B (dna): 
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C (dna): 
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D (dna): 
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A (protein): 
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