General information
PDB ID 5AKM
Title THE CRYSTAL STRUCTURE OF I-DMOI G20S IN COMPLEX WITH ITS TARGET DNA IN THE PRESENCE OF 2MM MG
PDB header HYDROLASE
Date 2015-03-04
Experimental method X-RAY DIFFRACTION
Resolution (A) 2.4
Kind dna
Organism DESULFUROCOCCUS MOBILIS, SYNTHETIC CONSTRUCT
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
 PDIdb 
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb5akm.pdb AFK BCDEGHIJLMNO 0
Biounits:
5akm.pdb1.pdb F GHIJ 1
5akm.pdb2.pdb K LMNO 1
5akm.pdb3.pdb A BCDE 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
LAGLIDADG_3 Domain P21505_104-178 0.0000000002 1 CL0324 A 107 178 BDE   
LAGLIDADG_3 Domain P21505_8-96 0.0000008 1 CL0324 A 11 95 BCDE  H-Bb S-Bb S-Mj L-Bb L-Mj 
LAGLIDADG_3 Domain P21505_104-178 0.00000000018 1 CL0324 F 107 178 GIJ   
LAGLIDADG_3 Domain P21505_8-96 0.0000007 1 CL0324 F 11 95 GHI  H-Bb S-Bb S-Mj L-Bb L-Mj 
LAGLIDADG_3 Domain P21505_104-178 0.00000000019 1 CL0324 K 107 178 LMNO  H-Bb H-Mj S-Bb S-Mj L-Bb L-Mj 
LAGLIDADG_3 Domain P21505_8-96 0.00000075 1 CL0324 K 11 95 LMN  H-Bb S-Bb S-Mj L-Bb L-Mj 
SCOP domains
No SCOP domains
GO terms
No GO terms
Sequences
Download file with secondary structure created by Stride  
5akm.pdb1.pdb:   [ download sequences in FASTA format ]
G (dna): 
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H (dna): 
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I (dna): 
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J (dna): 
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F (protein): 
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5akm.pdb2.pdb:   [ download sequences in FASTA format ]
L (dna): 
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M (dna): 
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N (dna): 
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O (dna): 
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K (protein): 
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5akm.pdb3.pdb:   [ download sequences in FASTA format ]
B (dna): 
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C (dna): 
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D (dna): 
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E (dna): 
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A (protein): 
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