General information
PDB ID 5AKN
Title THE CRYSTAL STRUCTURE OF I-DMOI Q42AK120M IN COMPLEX WITH ITS TARGET DNA NICKED IN THE NON-CODING STRAND B AND IN THE PRESENCE OF 2MM MN
PDB header HYDROLASE/DNA
Date 2015-03-04
Experimental method X-RAY DIFFRACTION
Resolution (A) 2.75
Kind dna
Organism DESULFUROCOCCUS MOBILIS, SYNTHETIC CONSTRUCT
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb5akn.pdb AFK BCDEGHJLMO 0
Biounits:
5akn.pdb1.pdb A BCDE 1
5akn.pdb2.pdb F GHJ 1
5akn.pdb3.pdb K LMO 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
LAGLIDADG_3 Domain P21505_104-178 9.7e-10 1 CL0324 A 104 178 BDEC  H-Bb H-Mj S-Bb S-Mj L-Bb L-Mj 
LAGLIDADG_3 Domain P21505_8-96 1.4e-05 1 CL0324 A 8 96 BCDE  H-Bb S-Bb S-Mj L-Bb L-Mj 
LAGLIDADG_3 Domain P21505_104-178 1e-09 1 CL0324 F 104 178 GHJ  H-Bb H-Mj S-Bb S-Mj L-Bb L-Mj 
LAGLIDADG_3 Domain P21505_8-96 1.6e-05 1 CL0324 F 8 96 GHJ  H-Bb S-Bb S-Mj L-Bb L-Mj 
LAGLIDADG_3 Domain P21505_104-178 1e-09 1 CL0324 K 104 178 LMO  H-Bb H-Mj S-Bb S-Mj L-Bb L-Mj 
LAGLIDADG_3 Domain P21505_8-96 1.6e-05 1 CL0324 K 8 96 LM  H-Bb S-Bb S-Mj L-Bb L-Mj 
SCOP domains
No SCOP domains
GO terms
Protein chains: GO type: GO description:
A/F/K=2-188 F endonuclease activity
A/F/K=2-188 P intein-mediated protein splicing
A/F/K=2-188 P intron homing
Sequences
Download file with secondary structure created by Stride  
5akn.pdb1.pdb:   [ download sequences in FASTA format ]
B (dna): 
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C (dna): 
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D (dna): 
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E (dna): 
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A (protein): 
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5akn.pdb2.pdb:   [ download sequences in FASTA format ]
G (dna): 
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H (dna): 
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J (dna): 
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F (protein): 
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5akn.pdb3.pdb:   [ download sequences in FASTA format ]
L (dna): 
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M (dna): 
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O (dna): 
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K (protein): 
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