General information
PDB ID 5BYG
Title X-RAY STRUCTURE OF AAV2 OBD-AAVS1 COMPLEX 2:1
PDB header DNA BINDING PROTEIN/DNA
Date 2015-06-10
Experimental method X-RAY DIFFRACTION
Resolution (A) 2.5
Kind dna
Organism ADENO-ASSOCIATED VIRUS 2, HOMO SAPIENS
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
 PDIdb 
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb5byg.pdb ABCD EFGH 0
Biounits:
5byg.pdb1.pdb AB EF 1
5byg.pdb2.pdb CD GH 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Rep_N Domain Q89268_4-192 4.3e-64 1 CL0169 A 1 192 EF  H-Bb H-Mn L-Bb L-Mj 
Rep_N Domain Q89268_4-192 6.4e-73 1 CL0169 B 4 192 EF  H-Bb H-Mn L-Bb L-Mj 
Rep_N Domain Q89268_4-192 3.9e-72 1 CL0169 C 4 192 GH  H-Bb H-Mn L-Bb L-Mj 
Rep_N Domain Q89268_4-192 2.6e-62 1 CL0169 D 4 192 GH  H-Bb H-Mn L-Bb L-Mj 
SCOP domains
No SCOP domains
GO terms
Protein chains: GO type: GO description:
A/B/C/D=1-210 C host cell nucleus
A/B/C/D=1-210 F ATP binding
A/B/C/D=1-210 P DNA replication
A/B/C/D=1-210 P modulation by virus of host G1/S transition checkpoint
A/B/C/D=1-210 P suppression by virus of G2/M transition of host mitotic cell cycle
A/B/C/D=1-210 P viral DNA genome replication
Sequences
Download file with secondary structure created by Stride  
5byg.pdb1.pdb:   [ download sequences in FASTA format ]
E (dna): 
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F (dna): 
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A (protein): 
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B (protein): 
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5byg.pdb2.pdb:   [ download sequences in FASTA format ]
G (dna): 
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H (dna): 
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C (protein): 
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D (protein): 
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