General information
PDB ID 5C8E
Title CRYSTAL STRUCTURE OF THERMUS THERMOPHILUS CARH BOUND TO ADENOSYLCOBALAMIN AND A 26-BP DNA SEGMENT
PDB header TRANSCRIPTION REGULATOR/DNA
Date 2015-06-25
Experimental method X-RAY DIFFRACTION
Resolution (A) 3.89
Kind dna
Organism THERMUS THERMOPHILUS HB27
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb5c8e.pdb ABCDEFGH IJKL 0
Biounits:
5c8e.pdb1.pdb ABCD IJ 1
5c8e.pdb2.pdb EFGH KL 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
B12-binding_2 Domain Q746J7_83-156 0.00000000000062 1 No_clan A 83 156   
B12-binding Domain Q746J7_165-273 0.00000037 1 CL0063 A 165 273   
B12-binding_2 Domain Q746J7_83-156 0.00000000000064 1 No_clan B 83 156   
B12-binding Domain Q746J7_165-273 0.00000038 1 CL0063 B 165 273   
B12-binding_2 Domain Q746J7_83-156 0.00000000000065 1 No_clan C 83 156   
B12-binding Domain Q746J7_165-273 0.00000039 1 CL0063 C 165 273   
B12-binding_2 Domain Q746J7_83-156 0.00000000000039 1 No_clan D 84 156   
B12-binding Domain Q746J7_165-273 0.00000019 1 CL0063 D 165 273   
B12-binding_2 Domain Q746J7_83-156 0.00000000000062 1 No_clan E 83 156   
B12-binding Domain Q746J7_165-273 0.00000037 1 CL0063 E 165 273   
B12-binding_2 Domain Q746J7_83-156 0.00000000000061 1 No_clan F 83 156   
B12-binding Domain Q746J7_165-273 0.00000036 1 CL0063 F 165 273   
B12-binding_2 Domain Q746J7_83-156 0.00000000000065 1 No_clan G 83 156   
B12-binding Domain Q746J7_165-273 0.00000039 1 CL0063 G 165 273   
B12-binding_2 Domain Q746J7_83-156 0.00000000000038 1 No_clan H 84 156   
B12-binding Domain Q746J7_165-273 0.00000018 1 CL0063 H 165 273   
MerR_1 Family Q746J7_7-77 2e-18 1 CL0123 A 7 77 J  S-Bb 
MerR_1 Family Q746J7_7-77 2e-18 1 CL0123 B 7 77 IJ  H-Bb H-Mj L-Bb 
MerR_1 Family Q746J7_7-77 2.1e-18 1 CL0123 C 7 77 IJ  H-Bb H-Mj S-Bb 
MerR_1 Family Q746J7_7-77 2e-18 1 CL0123 E 7 77 L  S-Bb 
MerR_1 Family Q746J7_7-77 0.0000000000000011 1 CL0123 F 7 77 K  L-Bb L-Mj 
MerR_1 Family Q746J7_7-77 2.1e-18 1 CL0123 G 7 77 KL  H-Bb H-Mj S-Bb L-Bb L-Mj 
SCOP domains
No SCOP domains
GO terms
No GO terms
Sequences
Download file with secondary structure created by Stride  
5c8e.pdb1.pdb:   [ download sequences in FASTA format ]
I (dna): 
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J (dna): 
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A (protein): 
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B (protein): 
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C (protein): 
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D (protein): 
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5c8e.pdb2.pdb:   [ download sequences in FASTA format ]
K (dna): 
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L (dna): 
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E (protein): 
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F (protein): 
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G (protein): 
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H (protein): 
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