General information
PDB ID 5CD4
Title THE TYPE IE CRISPR CASCADE COMPLEX FROM E. COLI, WITH TWO ASSEMBLIES IN THE ASYMMETRIC UNIT ARRANGED BACK-TO-BACK
PDB header HYDROLASE/RNA
Date 2015-07-03
Experimental method X-RAY DIFFRACTION
Resolution (A) 3.2
Kind rna
Organism ESCHERICHIA COLI
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
PRIDB
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb5cd4.pdb ABCDEFGHIJKMNOPQRSTUVW LX 0
Biounits:
5cd4.pdb1.pdb ABCDEFGHIJK L 1
5cd4.pdb2.pdb MNOPQRSTUVW X 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
CRISPR_assoc Domain Q46897_1-198 6.1e-42 1 CL0362 A 1 198 L   
CRISPR_assoc Domain Q46897_1-198 6e-38 1 CL0362 M 1 198 X   
Cas_CT1975 Family Q46899_5-358 1.4e-92 1 CL0362 B 5 358 L   
Cas_CT1975 Family Q46899_5-358 1.2e-94 1 CL0362 C 5 358 L   
Cas_CT1975 Family Q46899_5-358 2.1e-97 1 CL0362 D 5 358 L   
Cas_CT1975 Family Q46899_5-358 6.2e-97 1 CL0362 E 5 358 L   
Cas_CT1975 Family Q46899_5-358 6.2e-98 1 CL0362 F 5 358 L   
Cas_CT1975 Family Q46899_5-358 6.1e-98 1 CL0362 G 5 358 L   
Cas_Cas5d Family Q46898_4-217 2e-41 1 CL0362 H 4 215 L   
CRISPR_Cse1 Family Q46901_2-461 2e-69 1 No_clan I 2 461 L   
CRISPR_Cse2 Family P76632_21-152 0.000000001 1 No_clan J 21 152   
CRISPR_Cse2 Family P76632_21-152 0.0000000031 1 No_clan K 21 152   
Cas_CT1975 Family Q46899_5-358 1.4e-92 1 CL0362 N 5 358 X   
Cas_CT1975 Family Q46899_5-358 1.6e-96 1 CL0362 O 5 358 X   
Cas_CT1975 Family Q46899_5-358 9.2e-95 1 CL0362 P 5 358 X   
Cas_CT1975 Family Q46899_5-358 2e-95 1 CL0362 Q 5 358 X   
Cas_CT1975 Family Q46899_5-358 5.3e-96 1 CL0362 R 5 358 X   
Cas_CT1975 Family Q46899_5-358 6.2e-95 1 CL0362 S 5 358 X   
Cas_Cas5d Family Q46898_4-217 2e-41 1 CL0362 T 4 215 X   
CRISPR_Cse1 Family Q46901_2-461 6.4e-70 1 No_clan U 2 461 X   
CRISPR_Cse2 Family P76632_21-152 0.0000000043 1 No_clan V 21 152   
CRISPR_Cse2 Family P76632_21-152 0.0000000042 1 No_clan W 21 152   
SCOP domains
No SCOP domains
GO terms
No GO terms
Sequences
Download file with secondary structure created by Stride  
5cd4.pdb1.pdb:   [ download sequences in FASTA format ]
A (protein): 
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B (protein): 
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C (protein): 
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D (protein): 
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E (protein): 
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F (protein): 
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G (protein): 
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H (protein): 
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I (protein): 
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J (protein): 
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K (protein): 
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L (rna): 
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5cd4.pdb2.pdb:   [ download sequences in FASTA format ]
M (protein): 
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N (protein): 
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O (protein): 
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P (protein): 
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Q (protein): 
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R (protein): 
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S (protein): 
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T (protein): 
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U (protein): 
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V (protein): 
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W (protein): 
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X (rna): 
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