General information
PDB ID 5D4S
Title CRYSTAL STRUCTURE OF ARAR(DBD) IN COMPLEX WITH OPERATOR ORX1
PDB header TRANSCRIPTION/DNA
Date 2015-08-08
Experimental method X-RAY DIFFRACTION
Resolution (A) 1.97
Kind dna
Organism BACILLUS SUBTILIS (STRAIN 168), SYNTHETIC CONSTRUCT
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
 PDIdb 
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb5d4s.pdb AB TU 0
Biounits:
5d4s.pdb1.pdb AB 1
5d4s.pdb2.pdb TU 1
5d4s.pdb3.pdb AB TU 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
GntR Domain P96711_4-67 3.5e-23 1 CL0123 A 4 67  H-Bb H-Mj S-Bb L-Bb L-Mn 
GntR Domain P96711_4-67 3.5e-23 1 CL0123 A 4 67   
GntR Domain P96711_4-67 3.5e-23 1 CL0123 A 4 67 TU  H-Bb H-Mj S-Bb L-Bb L-Mn 
GntR Domain P96711_4-67 3.5e-23 1 CL0123 A 4 67 TU   
GntR Domain P96711_4-67 6.5e-23 1 CL0123 B 4 67  H-Bb H-Mj S-Bb L-Bb L-Mj L-Mn 
GntR Domain P96711_4-67 6.5e-23 1 CL0123 B 4 67   
GntR Domain P96711_4-67 6.5e-23 1 CL0123 B 4 67 TU  H-Bb H-Mj S-Bb L-Bb L-Mj L-Mn 
GntR Domain P96711_4-67 6.5e-23 1 CL0123 B 4 67 TU   
SCOP domains
No SCOP domains
GO terms
Protein chains: GO type: GO description:
A/B=1-68 C cytoplasm
A/B=1-68 F DNA-binding transcription factor activity
A/B=1-68 F transcription regulatory region sequence-specific DNA binding
A/B=1-68 P regulation of transcription, DNA-templated
Sequences
Download file with secondary structure created by Stride  
5d4s.pdb1.pdb:   [ download sequences in FASTA format ]
A (protein): 
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B (protein): 
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5d4s.pdb2.pdb:   [ download sequences in FASTA format ]
T (dna): 
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U (dna): 
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5d4s.pdb3.pdb:   [ download sequences in FASTA format ]
T (dna): 
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U (dna): 
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A (protein): 
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B (protein): 
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