General information
PDB ID 5D5V
Title CRYSTAL STRUCTURE OF HUMAN HSF1 WITH SATELLITE III REPEAT DNA
PDB header TRANSCRIPTION/DNA
Date 2015-08-11
Experimental method X-RAY DIFFRACTION
Resolution (A) 2.55
Kind dna
Organism HOMO SAPIENS
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb5d5v.pdb BD AC 0
Biounits:
5d5v.pdb1.pdb BD AC 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
HSF_DNA-bind Domain Q00613_18-118 8.3e-35 1 CL0123 B 18 118 AC  H-Bb H-Mj S-Bb L-Bb L-Mj 
HSF_DNA-bind Domain Q00613_18-118 6.1e-36 1 CL0123 D 18 118 AC  H-Bb H-Mj L-Bb L-Mj 
SCOP domains
No SCOP domains
GO terms
Protein chains: GO type: GO description:
B/D=1-120 C centrosome
B/D=1-120 C chaperone complex
B/D=1-120 C condensed chromosome kinetochore
B/D=1-120 C cytoplasm
B/D=1-120 C cytosol
B/D=1-120 C euchromatin
B/D=1-120 C heterochromatin
B/D=1-120 C host cell nucleus
B/D=1-120 C kinetochore
B/D=1-120 C mitotic spindle pole
B/D=1-120 C nuclear chromatin
B/D=1-120 C nuclear stress granule
B/D=1-120 C nucleoplasm
B/D=1-120 C nucleus
B/D=1-120 C perinuclear region of cytoplasm
B/D=1-120 C PML body
B/D=1-120 C pronucleus
B/D=1-120 C ribonucleoprotein complex
B/D=1-120 F chromatin DNA binding
B/D=1-120 F DNA binding
B/D=1-120 F DNA-binding transcription factor activity
B/D=1-120 F DNA-binding transcription factor activity, RNA polymerase II-specific
B/D=1-120 F DNA-binding transcription repressor activity, RNA polymerase II-specific
B/D=1-120 F heat shock protein binding
B/D=1-120 F Hsp90 protein binding
B/D=1-120 F identical protein binding
B/D=1-120 F promoter-specific chromatin binding
B/D=1-120 F protein heterodimerization activity
B/D=1-120 F protein kinase binding
B/D=1-120 F protein self-association
B/D=1-120 F RNA polymerase II cis-regulatory region sequence-specific DNA binding
B/D=1-120 F RNA polymerase II intronic transcription regulatory region sequence-specific DNA binding
B/D=1-120 F sequence-specific DNA binding
B/D=1-120 F sequence-specific double-stranded DNA binding
B/D=1-120 F sequence-specific single stranded DNA binding
B/D=1-120 F STAT family protein binding
B/D=1-120 F translation elongation factor binding
B/D=1-120 P cellular protein-containing complex assembly
B/D=1-120 P cellular response to angiotensin
B/D=1-120 P cellular response to cadmium ion
B/D=1-120 P cellular response to copper ion
B/D=1-120 P cellular response to diamide
B/D=1-120 P cellular response to estradiol stimulus
B/D=1-120 P cellular response to gamma radiation
B/D=1-120 P cellular response to heat
B/D=1-120 P cellular response to hydrogen peroxide
B/D=1-120 P cellular response to L-glutamine
B/D=1-120 P cellular response to lipopolysaccharide
B/D=1-120 P cellular response to nitroglycerin
B/D=1-120 P cellular response to potassium ion
B/D=1-120 P cellular response to sodium arsenite
B/D=1-120 P cellular response to unfolded protein
B/D=1-120 P defense response
B/D=1-120 P DNA repair
B/D=1-120 P embryonic placenta development
B/D=1-120 P embryonic process involved in female pregnancy
B/D=1-120 P female meiotic nuclear division
B/D=1-120 P MAPK cascade
B/D=1-120 P mRNA processing
B/D=1-120 P mRNA transcription
B/D=1-120 P mRNA transport
B/D=1-120 P negative regulation of cardiac muscle cell apoptotic process
B/D=1-120 P negative regulation of cell population proliferation
B/D=1-120 P negative regulation of double-strand break repair via nonhomologous end joining
B/D=1-120 P negative regulation of inclusion body assembly
B/D=1-120 P negative regulation of neuron death
B/D=1-120 P negative regulation of protein-containing complex assembly
B/D=1-120 P negative regulation of transcription by RNA polymerase II
B/D=1-120 P negative regulation of tumor necrosis factor production
B/D=1-120 P positive regulation of apoptotic DNA fragmentation
B/D=1-120 P positive regulation of cell population proliferation
B/D=1-120 P positive regulation of cold-induced thermogenesis
B/D=1-120 P positive regulation of cysteine-type endopeptidase activity involved in apoptotic process
B/D=1-120 P positive regulation of inclusion body assembly
B/D=1-120 P positive regulation of microtubule binding
B/D=1-120 P positive regulation of mitotic cell cycle
B/D=1-120 P positive regulation of mRNA polyadenylation
B/D=1-120 P positive regulation of multicellular organism growth
B/D=1-120 P positive regulation of transcription by RNA polymerase II
B/D=1-120 P positive regulation of transcription from RNA polymerase II promoter in response to heat stress
B/D=1-120 P positive regulation of tyrosine phosphorylation of STAT protein
B/D=1-120 P regulation of cellular response to heat
B/D=1-120 P regulation of transcription from RNA polymerase II promoter in response to stress
B/D=1-120 P response to activity
B/D=1-120 P response to hypobaric hypoxia
B/D=1-120 P response to nutrient
B/D=1-120 P response to psychosocial stress
B/D=1-120 P response to testosterone
B/D=1-120 P spermatogenesis
B/D=1-120 P viral process
Sequences
Download file with secondary structure created by Stride  
5d5v.pdb1.pdb:   [ download sequences in FASTA format ]
A (dna): 
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C (dna): 
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B (protein): 
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D (protein): 
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