General information
PDB ID 5D9Y
Title CRYSTAL STRUCTURE OF TET2-5FC COMPLEX
PDB header OXIDOREDUCTASE/DNA
Date 2015-08-19
Experimental method X-RAY DIFFRACTION
Resolution (A) 1.97
Kind dna
Organism HOMO SAPIENS, SYNTHETIC CONSTRUCT
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
 PDIdb 
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb5d9y.pdb A BC 0
Biounits:
5d9y.pdb1.pdb A BC 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Tet_JBP Domain Q6N021_1288-1464 1.4e-93 1 CL0029 A 1290 1843 BC  H-Bb H-Mj H-Mn S-Bb L-Bb L-Mn 
Tet_JBP Domain Q6N021_1463-1526 6.5e-26 1 CL0029 A 1842 1905   
SCOP domains
No SCOP domains
GO terms
Protein chains: GO type: GO description:
A=1129-1480, A=1844-1936 C nucleus
A=1129-1480, A=1844-1936 F DNA binding
A=1129-1480, A=1844-1936 F ferrous iron binding
A=1129-1480, A=1844-1936 F methylcytosine dioxygenase activity
A=1129-1480, A=1844-1936 F zinc ion binding
A=1129-1480, A=1844-1936 P 5-methylcytosine catabolic process
A=1129-1480, A=1844-1936 P cell cycle
A=1129-1480, A=1844-1936 P DNA demethylation
A=1129-1480, A=1844-1936 P histone H3-K4 trimethylation
A=1129-1480, A=1844-1936 P myeloid cell differentiation
A=1129-1480, A=1844-1936 P oxidative demethylation
A=1129-1480, A=1844-1936 P positive regulation of transcription by RNA polymerase II
A=1129-1480, A=1844-1936 P protein O-linked glycosylation
A=1129-1480, A=1844-1936 P response to organic cyclic compound
Sequences
Download file with secondary structure created by Stride  
5d9y.pdb1.pdb:   [ download sequences in FASTA format ]
B (dna): 
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C (dna): 
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A (protein): 
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