General information
PDB ID 5DFJ
Title HUMAN APE1 E96Q/D210N MISMATCH SUBSTRATE COMPLEX
PDB header LYASE/DNA
Date 2015-08-26
Experimental method X-RAY DIFFRACTION
Resolution (A) 1.85
Kind dna
Organism HOMO SAPIENS, SYNTHETIC CONSTRUCT
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
 PDIdb 
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb5dfj.pdb AB PV 0
Biounits:
5dfj.pdb1.pdb A PV 1
5dfj.pdb2.pdb B 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Exo_endo_phos Domain P27695_65-309 1.1e-18 1 CL0530 A 65 309 PV  H-Bb H-Mj L-Bb L-Mj L-Mn 
Exo_endo_phos Domain P27695_65-309 9.2e-17 1 CL0530 B 65 309   
SCOP domains
No SCOP domains
GO terms
Protein chains: GO type: GO description:
A/B=43-318 C centrosome
A/B=43-318 C cytoplasm
A/B=43-318 C endoplasmic reticulum
A/B=43-318 C mitochondrion
A/B=43-318 C nuclear chromosome, telomeric region
A/B=43-318 C nuclear speck
A/B=43-318 C nucleolus
A/B=43-318 C nucleoplasm
A/B=43-318 C nucleus
A/B=43-318 C perinuclear region of cytoplasm
A/B=43-318 C ribosome
A/B=43-318 C transcription regulator complex
A/B=43-318 F 3'-5' exonuclease activity
A/B=43-318 F chromatin DNA binding
A/B=43-318 F damaged DNA binding
A/B=43-318 F DNA binding
A/B=43-318 F DNA-(apurinic or apyrimidinic site) endonuclease activity
A/B=43-318 F double-stranded DNA 3'-5' exodeoxyribonuclease activity
A/B=43-318 F double-stranded DNA exodeoxyribonuclease activity
A/B=43-318 F double-stranded telomeric DNA binding
A/B=43-318 F endodeoxyribonuclease activity
A/B=43-318 F endonuclease activity
A/B=43-318 F metal ion binding
A/B=43-318 F NF-kappaB binding
A/B=43-318 F oxidoreductase activity
A/B=43-318 F phosphodiesterase I activity
A/B=43-318 F phosphoric diester hydrolase activity
A/B=43-318 F protein-containing complex binding
A/B=43-318 F RNA binding
A/B=43-318 F RNA-DNA hybrid ribonuclease activity
A/B=43-318 F site-specific endodeoxyribonuclease activity, specific for altered base
A/B=43-318 F transcription coactivator activity
A/B=43-318 F transcription corepressor activity
A/B=43-318 F uracil DNA N-glycosylase activity
A/B=43-318 P aging
A/B=43-318 P base-excision repair
A/B=43-318 P base-excision repair, base-free sugar-phosphate removal
A/B=43-318 P cell redox homeostasis
A/B=43-318 P cellular response to cAMP
A/B=43-318 P cellular response to hydrogen peroxide
A/B=43-318 P cellular response to peptide hormone stimulus
A/B=43-318 P DNA demethylation
A/B=43-318 P DNA recombination
A/B=43-318 P DNA repair
A/B=43-318 P negative regulation of smooth muscle cell migration
A/B=43-318 P positive regulation of G1/S transition of mitotic cell cycle
A/B=43-318 P positive regulation of transcription by RNA polymerase II
A/B=43-318 P regulation of apoptotic process
A/B=43-318 P regulation of mRNA stability
A/B=43-318 P response to drug
A/B=43-318 P telomere maintenance
A/B=43-318 P telomere maintenance via base-excision repair
Sequences
Download file with secondary structure created by Stride  
5dfj.pdb1.pdb:   [ download sequences in FASTA format ]
P (dna): 
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V (dna): 
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A (protein): 
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5dfj.pdb2.pdb:   [ download sequences in FASTA format ]
B (protein): 
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