General information
PDB ID 5DNM
Title NUCLEOSOME CORE PARTICLE CONTAINING ADDUCTS OF RUTHENIUM(II)-TOLUENE PTA COMPLEX
PDB header STRUCTURAL PROTEIN/DNA
Date 2015-09-10
Experimental method X-RAY DIFFRACTION
Resolution (A) 2.81
Kind dna
Organism XENOPUS LAEVIS, SYNTHETIC CONSTRUCT
Download
complex
View in
Jmol
Quick Links
PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb5dnm.pdb ABCDEFGH IJ 0
Biounits:
5dnm.pdb1.pdb ABCDEFGH IJ 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Histone Domain P84233_39-132 6.9e-46 1 CL0012 A 38 131 IJ   
CENP-T_C Domain P62799_26-99 0.0000000095 1 CL0012 B 25 98 IJ   
Histone Domain P06897_19-91 8e-16 1 CL0012 C 14 90 IJ   
Histone Domain P02281_33-102 6.3e-22 1 CL0012 D 28 98 IJ   
Histone Domain P84233_39-132 6.9e-46 1 CL0012 E 38 131 IJ   
CENP-T_C Domain P62799_18-99 0.00000001 1 CL0012 F 20 98 IJ   
Histone Domain P06897_19-91 8e-16 1 CL0012 G 14 90 IJ   
Histone Domain P02281_33-102 6.3e-22 1 CL0012 H 28 98 IJ   
Histone_H2A_C Family P06897_92-120 2.5e-18 1 No_clan C 91 119   
Histone_H2A_C Family P06897_92-120 2.5e-18 1 No_clan G 91 119   
SCOP domains
No SCOP domains
GO terms
No GO terms
Sequences
Download file with secondary structure created by Stride  
5dnm.pdb1.pdb:   [ download sequences in FASTA format ]
I (dna): 
Click "SHOW" for view sequence
J (dna): 
Click "SHOW" for view sequence
A (protein): 
Click "SHOW" for view sequence
B (protein): 
Click "SHOW" for view sequence
C (protein): 
Click "SHOW" for view sequence
D (protein): 
Click "SHOW" for view sequence
E (protein): 
Click "SHOW" for view sequence
F (protein): 
Click "SHOW" for view sequence
G (protein): 
Click "SHOW" for view sequence
H (protein): 
Click "SHOW" for view sequence
© NPIDB team 2003 - 2019

text