General information
PDB ID 5E17
Title T. THERMOPHILUS TRANSCRIPTION INITIATION COMPLEX HAVING A RRR DISCRIMINATOR SEQUENCE AND A NONTEMPLATE-STRAND LENGTH CORRESPONDING TO TSS SELECTION AT POSITION 7 (RPO-GGG-7)
PDB header TRANSCRIPTION/DNA/RNA
Date 2015-09-29
Experimental method X-RAY DIFFRACTION
Resolution (A) 3.2
Kind hybrid
Organism THERMUS THERMOPHILUS
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
PRIDB
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb5e17.pdb ABCDEF GH I 0
Biounits:
5e17.pdb1.pdb ABCDEF GH I 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
RNA_pol_A_bac Domain Q5SHR6_52-180 1.9e-25 1 No_clan A 52 180   
RNA_pol_L Domain Q5SHR6_26-222 1.8e-24 1 CL0509 A 26 222   
RNA_pol_A_bac Domain Q5SHR6_52-180 3e-25 1 No_clan B 52 180   
RNA_pol_L Domain Q5SHR6_26-222 1.6e-24 1 CL0509 B 26 222   
RNA_pol_Rpb2_6 Domain Q8RQE9_596-1026 6.9e-152 1 CL0410 C 596 1026 I   
RNA_pol_Rpb2_3 Domain Q8RQE9_393-461 4.1e-29 1 No_clan C 393 461 IGH  L-Mj L-Mn 
RNA_pol_Rpb2_7 Domain Q8RQE9_1028-1104 5.2e-26 1 No_clan C 1028 1104 G   
RNA_pol_Rpb2_45 Domain Q8RQE9_471-535 1.3e-24 1 No_clan C 471 535   
RNA_pol_Rpb2_2 Domain Q8RQE9_142-334 5.7e-11 1 No_clan C 142 334 H   
RNA_pol_Rpb1_1 Domain Q8RQE8_431-618 2.7e-46 1 No_clan D 430 618 G  H-Bb 
RNA_pol_Rpb1_2 Domain Q8RQE8_620-765 1.2e-35 1 No_clan D 620 765 GI   
RNA_pol_Rpb1_1 Domain Q8RQE8_3-191 3e-33 1 No_clan D 3 191   
RNA_pol_Rpb1_5 Domain Q8RQE8_1064-1296 4.7e-33 1 No_clan D 1064 1254 G  H-Bb 
RNA_pol_Rpb1_3 Domain Q8RQE8_768-954 8.8e-29 1 No_clan D 768 954   
RNA_pol_Rpb1_5 Domain Q8RQE8_1266-1432 5.7e-14 1 No_clan D 1258 1432   
RNA_pol_Rpb1_4 Domain Q8RQE8_983-1069 1e-13 1 No_clan D 983 1068   
Sigma70_r2 Domain Q5SKW1_187-257 2.9e-20 1 CL0123 F 187 257 H   
Sigma70_r4 Domain Q5SKW1_357-410 1.6e-18 1 CL0123 F 357 410   
RNA_pol_Rpb2_1 Family Q8RQE9_17-380 4.5e-38 1 No_clan C 17 380 H   
RNA_pol_Rpb6 Family Q8RQE7_8-75 3.5e-07 1 No_clan E 8 75   
Sigma70_r1_2 Family Q5SKW1_79-112 8.4e-17 1 No_clan F 79 112 H   
Sigma70_r3 Family Q5SKW1_266-345 2.9e-16 1 CL0123 F 266 345   
SCOP domains
No SCOP domains
GO terms
No GO terms
Sequences
Download file with secondary structure created by Stride  
5e17.pdb1.pdb:   [ download sequences in FASTA format ]
G (dna): 
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H (dna): 
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A (protein): 
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B (protein): 
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C (protein): 
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D (protein): 
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E (protein): 
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F (protein): 
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I (rna): 
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