NPIDB: 5E17 structure

General information

PDB ID

5E17

Title

T. THERMOPHILUS TRANSCRIPTION INITIATION COMPLEX HAVING A RRR DISCRIMINATOR SEQUENCE AND A NONTEMPLATE-STRAND LENGTH CORRESPONDING TO TSS SELECTION AT POSITION 7 (RPO-GGG-7)

PDB header

TRANSCRIPTION/DNA/RNA

Date

2015-09-29

Experimental method

X-RAY DIFFRACTION

Resolution (A)

3.2

Kind

hybrid

Organism

THERMUS THERMOPHILUS


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PDB	PDBe	MMDB	Jena	OCA
CATH	PDBsum	HSSP	PDBePISA	UniProt
ProteopediA	BIPA
	PRIDB

Composition of PDB entry and biounits
File:	Protein chains:	DNA chains:	RNA chains:	No. of models:	Action:

PDB entry:

pdb5e17.pdb	ABCDEF	GH	I	0

Biounits:

5e17.pdb1.pdb	ABCDEF	GH	I	1

Pfam domains
Name:	Type:	Domain:	E-value:	Significance:	Clan:	Prot. chain:	Start res.:	End res.:	Nuc. chains:	Int. mode:	Action:

RNA_pol_A_bac	Domain	Q5SHR6_52-180	2.1e-25	1	No_clan	A	52	180
RNA_pol_L	Domain	Q5SHR6_26-222	1.2e-21	1	CL0509	A	26	222
RNA_pol_A_bac	Domain	Q5SHR6_52-180	3.4e-25	1	No_clan	B	52	180
RNA_pol_L	Domain	Q5SHR6_26-222	1e-21	1	CL0509	B	26	222
RNA_pol_Rpb2_6	Domain	Q8RQE9_596-1026	6.9e-151	1	CL0410	C	596	1026	I
RNA_pol_Rpb2_3	Domain	Q8RQE9_393-461	5.1e-28	1	No_clan	C	393	461	IGH	L-Mj L-Mn
RNA_pol_Rpb2_7	Domain	Q8RQE9_1028-1104	8.4e-26	1	No_clan	C	1028	1104	G
RNA_pol_Rpb2_45	Domain	Q8RQE9_471-535	1.9e-24	1	No_clan	C	471	535
RNA_pol_Rpb2_2	Domain	Q8RQE9_142-334	6.6e-11	1	No_clan	C	142	334	H
RNA_pol_Rpb1_1	Domain	Q8RQE8_431-618	3.1e-46	1	No_clan	D	430	618	G	H-Bb
RNA_pol_Rpb1_2	Domain	Q8RQE8_620-765	1.4e-35	1	No_clan	D	620	765	GI
RNA_pol_Rpb1_1	Domain	Q8RQE8_3-191	3.5e-33	1	No_clan	D	3	191
RNA_pol_Rpb1_5	Domain	Q8RQE8_1064-1296	5.3e-33	1	No_clan	D	1064	1254	G	H-Bb
RNA_pol_Rpb1_3	Domain	Q8RQE8_768-954	9.2e-29	1	No_clan	D	768	954
RNA_pol_Rpb1_5	Domain	Q8RQE8_1266-1432	6.5e-14	1	No_clan	D	1258	1432
RNA_pol_Rpb1_4	Domain	Q8RQE8_983-1069	9.1e-14	1	No_clan	D	983	1069
Sigma70_r2	Domain	Q5SKW1_187-257	2.5e-20	1	CL0123	F	187	257	H
Sigma70_r4	Domain	Q5SKW1_357-410	2.5e-18	1	CL0123	F	357	410
RNA_pol_Rpb2_1	Family	Q8RQE9_17-380	5.2e-38	1	No_clan	C	17	380	H
RNA_pol_Rpb6	Family	Q8RQE7_8-75	1.4e-07	1	No_clan	E	8	75
Sigma70_r1_2	Family	Q5SKW1_79-112	1.7e-16	1	No_clan	F	79	112	H
Sigma70_r3	Family	Q5SKW1_266-345	1.7e-16	1	CL0123	F	266	345

SCOP domains
No SCOP domains

GO terms
Protein chains:	GO type:	GO description:
A/B=1-315	F	DNA binding
A/B=1-315	F	DNA-directed 5'-3' RNA polymerase activity
A/B=1-315	F	protein dimerization activity
A/B=1-315	P	transcription, DNA-templated
C=1-1119	F	DNA binding
C=1-1119	F	DNA-directed 5'-3' RNA polymerase activity
C=1-1119	F	ribonucleoside binding
C=1-1119	P	transcription, DNA-templated
D=1-1524	F	DNA binding
D=1-1524	F	DNA-directed 5'-3' RNA polymerase activity
D=1-1524	F	magnesium ion binding
D=1-1524	F	zinc ion binding
D=1-1524	P	transcription, DNA-templated
E=1-99	F	DNA binding
E=1-99	F	DNA-directed 5'-3' RNA polymerase activity
E=1-99	P	transcription, DNA-templated

Sequences

Download file with secondary structure created by Stride

5e17.pdb1.pdb: [ download sequences in FASTA format ]

G (dna):