General information
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| PDB ID | 5E17 |
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| Title | T. THERMOPHILUS TRANSCRIPTION INITIATION COMPLEX HAVING A RRR DISCRIMINATOR SEQUENCE AND A NONTEMPLATE-STRAND LENGTH CORRESPONDING TO TSS SELECTION AT POSITION 7 (RPO-GGG-7) | ||||
| PDB header | TRANSCRIPTION/DNA/RNA | ||||
| Date | 2015-09-29 | ||||
| Experimental method | X-RAY DIFFRACTION | ||||
| Resolution (A) | 3.2 | ||||
| Kind | hybrid | ||||
| Organism | THERMUS THERMOPHILUS | ||||
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Quick Links
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Composition of PDB entry and biounits
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| File: | Protein chains: | DNA chains: | RNA chains: | No. of models: | Action: |
| PDB entry: | |||||
| pdb5e17.pdb | ABCDEF | GH | I | 0 |
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| Biounits: | |||||
| 5e17.pdb1.pdb | ABCDEF | GH | I | 1 |
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Pfam domains
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| Name: | Type: | Domain: | E-value: | Significance: | Clan: | Prot. chain: | Start res.: | End res.: | Nuc. chains: | Int. mode: | Action: |
RNA_pol_A_bac
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Domain | Q5SHR6_52-180 | 1.9e-25 | 1 | No_clan | A | 52 | 180 |
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RNA_pol_L
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Domain | Q5SHR6_26-222 | 1.8e-24 | 1 |
CL0509
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A | 26 | 222 |
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RNA_pol_A_bac
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Domain | Q5SHR6_52-180 | 3e-25 | 1 | No_clan | B | 52 | 180 |
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RNA_pol_L
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Domain | Q5SHR6_26-222 | 1.6e-24 | 1 |
CL0509
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B | 26 | 222 |
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RNA_pol_Rpb2_6
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Domain | Q8RQE9_596-1026 | 6.9e-152 | 1 |
CL0410
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C | 596 | 1026 | I |
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RNA_pol_Rpb2_3
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Domain | Q8RQE9_393-461 | 4.1e-29 | 1 | No_clan | C | 393 | 461 | IGH | L-Mj L-Mn |
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RNA_pol_Rpb2_7
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Domain | Q8RQE9_1028-1104 | 5.2e-26 | 1 | No_clan | C | 1028 | 1104 | G |
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RNA_pol_Rpb2_45
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Domain | Q8RQE9_471-535 | 1.3e-24 | 1 | No_clan | C | 471 | 535 |
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RNA_pol_Rpb2_2
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Domain | Q8RQE9_142-334 | 5.7e-11 | 1 | No_clan | C | 142 | 334 | H |
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RNA_pol_Rpb1_1
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Domain | Q8RQE8_431-618 | 2.7e-46 | 1 | No_clan | D | 430 | 618 | G | H-Bb |
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RNA_pol_Rpb1_2
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Domain | Q8RQE8_620-765 | 1.2e-35 | 1 | No_clan | D | 620 | 765 | GI |
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RNA_pol_Rpb1_1
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Domain | Q8RQE8_3-191 | 3e-33 | 1 | No_clan | D | 3 | 191 |
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RNA_pol_Rpb1_5
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Domain | Q8RQE8_1064-1296 | 4.7e-33 | 1 | No_clan | D | 1064 | 1254 | G | H-Bb |
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RNA_pol_Rpb1_3
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Domain | Q8RQE8_768-954 | 8.8e-29 | 1 | No_clan | D | 768 | 954 |
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RNA_pol_Rpb1_5
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Domain | Q8RQE8_1266-1432 | 5.7e-14 | 1 | No_clan | D | 1258 | 1432 |
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RNA_pol_Rpb1_4
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Domain | Q8RQE8_983-1069 | 1e-13 | 1 | No_clan | D | 983 | 1068 |
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Sigma70_r2
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Domain | Q5SKW1_187-257 | 2.9e-20 | 1 |
CL0123
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F | 187 | 257 | H |
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Sigma70_r4
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Domain | Q5SKW1_357-410 | 1.6e-18 | 1 |
CL0123
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F | 357 | 410 |
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RNA_pol_Rpb2_1
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Family | Q8RQE9_17-380 | 4.5e-38 | 1 | No_clan | C | 17 | 380 | H |
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RNA_pol_Rpb6
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Family | Q8RQE7_8-75 | 3.5e-07 | 1 | No_clan | E | 8 | 75 |
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Sigma70_r1_2
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Family | Q5SKW1_79-112 | 8.4e-17 | 1 | No_clan | F | 79 | 112 | H |
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Sigma70_r3
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Family | Q5SKW1_266-345 | 2.9e-16 | 1 |
CL0123
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F | 266 | 345 |
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SCOP domains
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| No SCOP domains | |||||||
| GO terms | ||||||
| No GO terms | ||||||
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Sequences
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Download file with secondary structure created by Stride
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5e17.pdb1.pdb:
[
download sequences in FASTA format
]
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G (dna):
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H (dna):
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A (protein):
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B (protein):
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C (protein):
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D (protein):
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E (protein):
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F (protein):
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I (rna):
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