General information
PDB ID 5EF0
Title RADIATION DAMAGE TO THE TRAP-RNA COMPLEX: DOSE (DWD) 16.7 MGY
PDB header RNA BINDING PROTEIN
Date 2015-10-23
Experimental method X-RAY DIFFRACTION
Resolution (A) 1.98
Kind rna
Organism GEOBACILLUS STEAROTHERMOPHILUS, SYNTHETIC CONSTRUCT
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
PRIDB
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb5ef0.pdb ABCDEFGHIJKLMNOPQRSTUV W 0
Biounits:
5ef0.pdb1.pdb ABCDEFGHIJK 1
5ef0.pdb2.pdb LMNOPQRSTUV W 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
TrpBP Domain Q9X6J6_5-71 2.8e-41 1 No_clan A 6 73   
TrpBP Domain Q9X6J6_5-71 6e-41 1 No_clan B 7 73   
TrpBP Domain Q9X6J6_5-71 2.8e-41 1 No_clan C 6 73   
TrpBP Domain Q9X6J6_5-71 6.3e-41 1 No_clan D 7 73   
TrpBP Domain Q9X6J6_5-71 6e-41 1 No_clan E 7 73   
TrpBP Domain Q9X6J6_5-71 6.3e-41 1 No_clan F 7 73   
TrpBP Domain Q9X6J6_5-71 6e-41 1 No_clan G 7 73   
TrpBP Domain Q9X6J6_5-71 6e-41 1 No_clan H 7 73   
TrpBP Domain Q9X6J6_5-71 6e-41 1 No_clan I 7 73   
TrpBP Domain Q9X6J6_5-71 5.6e-41 1 No_clan J 7 73   
TrpBP Domain Q9X6J6_5-71 6e-41 1 No_clan K 7 73   
TrpBP Domain Q9X6J6_5-71 2e-41 1 No_clan L 5 73 W   
TrpBP Domain Q9X6J6_5-71 2e-41 1 No_clan M 5 73 W   
TrpBP Domain Q9X6J6_5-71 2e-41 1 No_clan N 5 73 W   
TrpBP Domain Q9X6J6_5-71 2e-41 1 No_clan O 5 73 W   
TrpBP Domain Q9X6J6_5-71 2e-41 1 No_clan P 5 73 W   
TrpBP Domain Q9X6J6_5-71 2e-41 1 No_clan Q 5 73 W   
TrpBP Domain Q9X6J6_5-71 2e-41 1 No_clan R 5 73 W   
TrpBP Domain Q9X6J6_5-71 2e-41 1 No_clan S 5 73 W   
TrpBP Domain Q9X6J6_5-71 2e-41 1 No_clan T 5 73 W   
TrpBP Domain Q9X6J6_5-71 2e-41 1 No_clan U 5 73 W   
TrpBP Domain Q9X6J6_5-71 2e-41 1 No_clan V 5 73 W   
SCOP domains
No SCOP domains
GO terms
No GO terms
Sequences
Download file with secondary structure created by Stride  
5ef0.pdb1.pdb:   [ download sequences in FASTA format ]
A (protein): 
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B (protein): 
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C (protein): 
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D (protein): 
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E (protein): 
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F (protein): 
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G (protein): 
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H (protein): 
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I (protein): 
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J (protein): 
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K (protein): 
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5ef0.pdb2.pdb:   [ download sequences in FASTA format ]
L (protein): 
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M (protein): 
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N (protein): 
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O (protein): 
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P (protein): 
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Q (protein): 
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R (protein): 
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S (protein): 
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T (protein): 
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U (protein): 
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V (protein): 
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W (rna): 
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