General information
PDB ID 5EF6
Title STRUCTURE OF HOXB13 COMPLEX WITH METHYLATED DNA
PDB header TRANSCRIPTION
Date 2015-10-23
Experimental method X-RAY DIFFRACTION
Resolution (A) 3
Kind dna
Organism HOMO SAPIENS, SYNTHETIC CONSTRUCT
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb5ef6.pdb ABGJ CFDEHIKL 0
Biounits:
5ef6.pdb1.pdb A CF 1
5ef6.pdb2.pdb B DE 1
5ef6.pdb3.pdb G HI 1
5ef6.pdb4.pdb J KL 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Homeodomain Domain Q92826_217-273 3.9e-19 1 CL0123 A 217 273 CF  H-Bb H-Mj L-Bb L-Mn 
Homeodomain Domain Q92826_217-273 3.9e-19 1 CL0123 B 217 273 DE  H-Bb H-Mj L-Bb L-Mn 
Homeodomain Domain Q92826_217-273 4.1e-19 1 CL0123 G 217 273 HI  H-Bb H-Mj L-Bb L-Mn 
Homeodomain Domain Q92826_217-273 4.1e-19 1 CL0123 J 217 273 KL  H-Bb H-Mj L-Bb L-Mn 
SCOP domains
No SCOP domains
GO terms
Protein chains: GO type: GO description:
A/B/G/J=217-278 C nuclear chromatin
A/B/G/J=217-278 C nucleoplasm
A/B/G/J=217-278 C transcription regulator complex
A/B/G/J=217-278 F DNA-binding transcription factor activity, RNA polymerase II-specific
A/B/G/J=217-278 F DNA-binding transcription repressor activity, RNA polymerase II-specific
A/B/G/J=217-278 F methyl-CpG binding
A/B/G/J=217-278 F sequence-specific DNA binding
A/B/G/J=217-278 F sequence-specific double-stranded DNA binding
A/B/G/J=217-278 P angiogenesis
A/B/G/J=217-278 P epidermis development
A/B/G/J=217-278 P epithelial cell maturation involved in prostate gland development
A/B/G/J=217-278 P negative regulation of transcription by RNA polymerase II
A/B/G/J=217-278 P prostate epithelial cord arborization involved in prostate glandular acinus morphogenesis
A/B/G/J=217-278 P regulation of growth
A/B/G/J=217-278 P response to testosterone
A/B/G/J=217-278 P response to wounding
Sequences
Download file with secondary structure created by Stride  
5ef6.pdb1.pdb:   [ download sequences in FASTA format ]
C (dna): 
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F (dna): 
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A (protein): 
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5ef6.pdb2.pdb:   [ download sequences in FASTA format ]
D (dna): 
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E (dna): 
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B (protein): 
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5ef6.pdb3.pdb:   [ download sequences in FASTA format ]
H (dna): 
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I (dna): 
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G (protein): 
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5ef6.pdb4.pdb:   [ download sequences in FASTA format ]
K (dna): 
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L (dna): 
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J (protein): 
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