General information
PDB ID 5EJK
Title CRYSTAL STRUCTURE OF THE ROUS SARCOMA VIRUS INTASOME
PDB header TRANSFERASE/DNA
Date 2015-11-02
Experimental method X-RAY DIFFRACTION
Resolution (A) 3.8
Kind dna
Organism ROUS SARCOMA VIRUS (STRAIN PRAGUE C), ROUS SARCOMA VIRUS (STRAIN SCHMIDT-RUPPIN E), HOMO SAPIENS
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb5ejk.pdb ABCDEFGH IJKLMNkn 0
Biounits:
5ejk.pdb1.pdb ABCDEFGH IJKLMNkn 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
rve Domain P03354_1335-1430 1.4e-13 1 CL0219 A 55 150 IKLM  H-Bb S-Bb L-Bb L-Mn 
Integrase_Zn Domain P03354_1285-1320 1.6e-10 1 No_clan A 5 42 JI  H-Bb H-Mj 
IN_DBD_C Domain P03354_1508-1547 3.3e-06 1 CL0010 A 227 267 M  L-Mj 
rve Domain P03354_1335-1430 5.6e-14 1 CL0219 B 38 150   
Integrase_Zn Domain P03354_1285-1320 1.1e-10 1 No_clan B 5 58   
IN_DBD_C Domain P03354_1508-1547 3e-06 1 CL0010 B 227 267   
rve Domain P03354_1335-1430 1.2e-13 1 CL0219 C 55 150   
Integrase_Zn Domain P03354_1285-1320 2.9e-10 1 No_clan C 5 54   
IN_DBD_C Domain P03354_1508-1547 3e-06 1 CL0010 C 227 267 J   
rve Domain P03354_1335-1430 1.2e-11 1 CL0219 D 55 148   
Integrase_Zn Domain P03354_1285-1320 1.1e-10 1 No_clan D 5 53   
IN_DBD_C Domain P03354_1508-1547 2.9e-06 1 CL0010 D 227 267 M  L-Bb 
rve Domain P03354_1335-1430 1.4e-13 1 CL0219 E 55 150 IJLN  H-Bb S-Bb L-Bb L-Mn 
Integrase_Zn Domain P03354_1285-1320 1.6e-10 1 No_clan E 5 42   
IN_DBD_C Domain P03354_1508-1547 3.3e-06 1 CL0010 E 227 267 J  S-Bb L-Mj 
rve Domain P03354_1335-1430 1e-13 1 CL0219 F 39 150   
Integrase_Zn Domain P03354_1285-1320 2.9e-10 1 No_clan F 5 56   
IN_DBD_C Domain P03354_1508-1547 3e-06 1 CL0010 F 227 267   
rve Domain P03354_1335-1425 8.8e-13 1 CL0219 G 55 159   
Integrase_Zn Domain P03354_1285-1320 1.1e-10 1 No_clan G 5 53   
IN_DBD_C Domain P03354_1508-1547 2.9e-06 1 CL0010 G 227 267 M   
rve Domain P03354_1335-1430 1.3e-13 1 CL0219 H 55 150   
Integrase_Zn Domain P03354_1285-1320 1.5e-10 1 No_clan H 5 42   
IN_DBD_C Domain P03354_1508-1547 3.2e-06 1 CL0010 H 227 267 J  S-Bb L-Bb 
SCOP domains
No SCOP domains
GO terms
Protein chains: GO type: GO description:
A/B/C/D/E/F/G/H=1281-1550 C viral nucleocapsid
A/B/C/D/E/F/G/H=1281-1550 F aspartic-type endopeptidase activity
A/B/C/D/E/F/G/H=1281-1550 F DNA binding
A/B/C/D/E/F/G/H=1281-1550 F DNA-directed DNA polymerase activity
A/B/C/D/E/F/G/H=1281-1550 F RNA binding
A/B/C/D/E/F/G/H=1281-1550 F RNA-directed DNA polymerase activity
A/B/C/D/E/F/G/H=1281-1550 F RNA-DNA hybrid ribonuclease activity
A/B/C/D/E/F/G/H=1281-1550 F zinc ion binding
A/B/C/D/E/F/G/H=1281-1550 P DNA integration
A/B/C/D/E/F/G/H=1281-1550 P DNA recombination
A/B/C/D/E/F/G/H=1281-1550 P establishment of integrated proviral latency
A/B/C/D/E/F/G/H=1281-1550 P reverse transcription
A/B/C/D/E/F/G/H=1281-1550 P viral entry into host cell
A/B/C/D/E/F/G/H=1281-1550 P viral genome integration into host DNA
Sequences
Download file with secondary structure created by Stride  
5ejk.pdb1.pdb:   [ download sequences in FASTA format ]
I (dna): 
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J (dna): 
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K (dna): 
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L (dna): 
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M (dna): 
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N (dna): 
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A (protein): 
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B (protein): 
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C (protein): 
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D (protein): 
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E (protein): 
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F (protein): 
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G (protein): 
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H (protein): 
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