General information
PDB ID 5EJK
Title CRYSTAL STRUCTURE OF THE ROUS SARCOMA VIRUS INTASOME
PDB header TRANSFERASE/DNA
Date 2015-11-02
Experimental method X-RAY DIFFRACTION
Resolution (A) 3.8
Kind dna
Organism ROUS SARCOMA VIRUS (STRAIN PRAGUE C), ROUS SARCOMA VIRUS (STRAIN SCHMIDT-RUPPIN E), HOMO SAPIENS
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb5ejk.pdb ABCDEFGH IJKLMNkn 0
Biounits:
5ejk.pdb1.pdb ABCDEFGH IJKLMNkn 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
rve Domain P03354_1335-1447 1.3e-16 1 CL0219 A 55 168 IKLM  H-Bb H-Mn L-Mn 
Integrase_Zn Domain P03354_1285-1322 0.0000000004 1 No_clan A 5 42 JI  H-Bb H-Mj 
IN_DBD_C Domain P03354_1504-1547 0.000017 1 No_clan A 224 267 M  L-Mj 
rve Domain P03354_1335-1447 4.7e-17 1 CL0219 B 38 168   
Integrase_Zn Domain P03354_1285-1322 0.00000000027 1 No_clan B 5 58   
IN_DBD_C Domain P03354_1504-1547 0.000016 1 No_clan B 224 267   
rve Domain P03354_1335-1447 1.2e-16 1 CL0219 C 55 168   
Integrase_Zn Domain P03354_1285-1322 0.00000000057 1 No_clan C 5 55   
IN_DBD_C Domain P03354_1504-1547 0.000016 1 No_clan C 224 267 J   
rve Domain P03354_1335-1447 0.00000000000045 1 CL0219 D 55 168   
Integrase_Zn Domain P03354_1285-1322 0.00000000029 1 No_clan D 5 53   
IN_DBD_C Domain P03354_1504-1547 0.000015 1 No_clan D 224 267 M  L-Bb 
rve Domain P03354_1335-1447 1.3e-16 1 CL0219 E 55 168 IJLN  H-Bb H-Mn L-Mn 
Integrase_Zn Domain P03354_1285-1322 0.0000000004 1 No_clan E 5 42   
IN_DBD_C Domain P03354_1504-1547 0.000017 1 No_clan E 224 267 J  S-Bb L-Mj 
rve Domain P03354_1335-1447 9.8e-17 1 CL0219 F 39 168   
Integrase_Zn Domain P03354_1285-1322 0.0000000007 1 No_clan F 5 56   
IN_DBD_C Domain P03354_1504-1547 0.000016 1 No_clan F 224 267   
rve Domain P03354_1335-1447 0.00000000000011 1 CL0219 G 55 167   
Integrase_Zn Domain P03354_1285-1322 0.00000000029 1 No_clan G 5 53   
IN_DBD_C Domain P03354_1504-1547 0.000015 1 No_clan G 224 267 M   
rve Domain P03354_1335-1447 1.2e-16 1 CL0219 H 55 168   
Integrase_Zn Domain P03354_1285-1322 0.00000000039 1 No_clan H 5 42   
IN_DBD_C Domain P03354_1504-1547 0.000017 1 No_clan H 224 267 J  S-Bb L-Bb 
SCOP domains
No SCOP domains
GO terms
No GO terms
Sequences
Download file with secondary structure created by Stride  
5ejk.pdb1.pdb:   [ download sequences in FASTA format ]
I (dna): 
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J (dna): 
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k (dna): 
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L (dna): 
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M (dna): 
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n (dna): 
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A (protein): 
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B (protein): 
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C (protein): 
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D (protein): 
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E (protein): 
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F (protein): 
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G (protein): 
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H (protein): 
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