General information
PDB ID 5FDK
Title CRYSTAL STRUCTURE OF RECU(D88N) IN COMPLEX WITH PALINDROMIC DNA DUPLEX
PDB header HYDROLASE
Date 2015-12-16
Experimental method X-RAY DIFFRACTION
Resolution (A) 3.21
Kind dna
Organism BACILLUS SUBTILIS, SYNTHETIC CONSTRUCT
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb5fdk.pdb ABCD EFGH 0
Biounits:
5fdk.pdb1.pdb AC EFGH 1
5fdk.pdb2.pdb BD EFGH 2
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
RecU Domain P39792_31-194 2e-64 1 CL0236 A 31 194 FH  S-Bb S-Mj L-Bb L-Mj L-Mn 
RecU Domain P39792_31-194 1.7e-61 1 CL0236 B 34 194 EF  S-Bb S-Mj L-Bb 
RecU Domain P39792_31-194 1.9e-64 1 CL0236 C 31 194 HF  S-Bb L-Bb L-Mj 
RecU Domain P39792_31-194 3.1e-64 1 CL0236 D 31 194 GHEF  L-Mj L-Mn 
SCOP domains
No SCOP domains
GO terms
Protein chains: GO type: GO description:
A/B/C/D=1-199 C cytoplasm
A/B/C/D=1-199 F crossover junction endodeoxyribonuclease activity
A/B/C/D=1-199 F DNA binding
A/B/C/D=1-199 F magnesium ion binding
A/B/C/D=1-199 P chromosome segregation
A/B/C/D=1-199 P DNA recombination
A/B/C/D=1-199 P DNA repair
Sequences
Download file with secondary structure created by Stride  
5fdk.pdb1.pdb:   [ download sequences in FASTA format ]
E (dna): 
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F (dna): 
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G (dna): 
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H (dna): 
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A (protein): 
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C (protein): 
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5fdk.pdb2.pdb:   [ download sequences in FASTA format ]
E (dna): 
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F (dna): 
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B (protein): 
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D (protein): 
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