General information
PDB ID 5FJ8
Title CRYO-EM STRUCTURE OF YEAST RNA POLYMERASE III ELONGATION COMPLEX AT 3. 9 A
PDB header TRANSCRIPTION
Date 2015-10-06
Experimental method ELECTRON MICROSCOPY
Resolution (A) 3.9
Kind hybrid
Organism SACCHAROMYCES CEREVISIAE, SYNTHETIC CONSTRUCT
Download
complex
View in
Jmol
Quick Links
PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
PRIDB
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb5fj8.pdb ABCDEFGHIJKLMNOPQ RS T 0
Biounits:
5fj8.pdb1.pdb ABCDEFGHIJKLMNOPQ RS T 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
RNA_pol_Rpb1_1 Domain P04051_10-368 1.8e-79 1 No_clan A 10 368 T   
RNA_pol_Rpb1_2 Domain P04051_370-537 7.3e-76 1 No_clan A 370 537   
RNA_pol_Rpb1_5 Domain P04051_855-1384 1.8e-61 1 No_clan A 855 1384 R   
RNA_pol_Rpb1_3 Domain P04051_540-717 1.4e-38 1 No_clan A 540 717   
RNA_pol_Rpb1_4 Domain P04051_742-848 4.4e-30 1 No_clan A 742 848   
RNA_pol_Rpb2_6 Domain P22276_684-1056 9.9e-125 1 CL0410 B 684 1056   
RNA_pol_Rpb2_2 Domain P22276_201-378 2.9e-43 1 No_clan B 201 378   
RNA_pol_Rpb2_7 Domain P22276_1058-1144 1.6e-33 1 No_clan B 1058 1144   
RNA_pol_Rpb2_4 Domain P22276_555-616 8.5e-25 1 No_clan B 555 616   
RNA_pol_Rpb2_3 Domain P22276_456-520 3.9e-18 1 No_clan B 456 520 S   
RNA_pol_Rpb2_5 Domain P22276_637-677 4.4e-10 1 No_clan B 637 677   
RNA_pol_A_bac Domain P07703_83-220 6.6e-30 1 No_clan C 83 220   
RNA_pol_L Domain P07703_53-325 1.6e-20 1 CL0509 C 53 325   
RNA_pol_Rpb5_C Domain P20434_142-214 1.6e-31 1 No_clan E 142 214   
RNA_pol_Rpb5_N Domain P20434_6-100 1.1e-29 1 CL0236 E 6 100   
RNA_pol_Rbc25 Domain P35718_79-211 3.2e-42 1 CL0021 G 79 211   
SHS2_Rpb7-N Domain P35718_8-77 5.8e-20 1 CL0319 G 8 77   
RNA_POL_M_15KD Domain Q04307_2-38 1.9e-18 1 CL0167 I 2 38   
RNA_pol_N Domain P22139_1-60 6.1e-30 1 No_clan J 1 60   
RNA_pol_L_2 Domain P28000_60-134 3.8e-33 1 CL0509 K 60 134   
DNA_RNApol_7kD Domain P40422_29-60 1.8e-16 1 CL0167 L 29 60   
HTH_9 Domain P32349_47-109 5.9e-21 1 CL0123 O 47 109   
RNA_pol_Rpb2_1 Family P22276_56-431 7e-63 1 No_clan B 56 431   
RNA_pol_Rpb4 Family P47076_10-161 3.1e-33 1 CL0426 D 10 161   
RNA_pol_Rpb6 Family P20435_79-132 7e-18 1 No_clan F 79 132   
RNA_pol_Rpb8 Family P20436_7-146 9.4e-45 1 CL0021 H 7 146   
Sin_N Family P36121_71-262 7e-11 1 No_clan M 71 256   
RNA_pol_Rpc4 Family P25441_301-422 6.3e-17 1 No_clan N 317 422   
RNA_pol_Rpc82 Family 7.1e-48 1 No_clan O 189 450
RNA_pol_Rpc82 Family 2.6e-09 1 No_clan O 371 487
RNA_pol_Rpc34 Family P32910_171-315 1.7e-16 1 CL0123 P 187 317   
SCOP domains
No SCOP domains
GO terms
No GO terms
Sequences
Download file with secondary structure created by Stride  
5fj8.pdb1.pdb:   [ download sequences in FASTA format ]
R (dna): 
Click "SHOW" for view sequence
S (dna): 
Click "SHOW" for view sequence
A (protein): 
Click "SHOW" for view sequence
B (protein): 
Click "SHOW" for view sequence
C (protein): 
Click "SHOW" for view sequence
D (protein): 
Click "SHOW" for view sequence
E (protein): 
Click "SHOW" for view sequence
F (protein): 
Click "SHOW" for view sequence
G (protein): 
Click "SHOW" for view sequence
H (protein): 
Click "SHOW" for view sequence
I (protein): 
Click "SHOW" for view sequence
J (protein): 
Click "SHOW" for view sequence
K (protein): 
Click "SHOW" for view sequence
L (protein): 
Click "SHOW" for view sequence
M (protein): 
Click "SHOW" for view sequence
N (protein): 
Click "SHOW" for view sequence
O (protein): 
Click "SHOW" for view sequence
P (protein): 
Click "SHOW" for view sequence
Q (protein): 
Click "SHOW" for view sequence
T (rna): 
Click "SHOW" for view sequence
© NPIDB team 2003 - 2019

text