General information
PDB ID 5FLX
Title MAMMALIAN 40S HCV-IRES COMPLEX
PDB header RIBOSOME
Date 2015-10-28
Experimental method ELECTRON MICROSCOPY
Resolution (A) 3.9
Kind rna
Organism ORYCTOLAGUS CUNICULUS, HEPATITIS C VIRUS
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
PRIDB
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb5flx.pdb ABCDEFGHIJKLMNOPQRSTUVWXYZabcdefg 1z 0
Biounits:
5flx.pdb1.pdb ABCDEFGHIJKLMNOPQRSTUVWXYZabcdefg 1z 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Ribosomal_S5 Domain P15880_102-166 1.2e-32 1 CL0196 C 102 166 1   
Ribosomal_S5_C Domain P15880_185-256 2.1e-28 1 CL0329 C 185 256 1   
Ribosomal_S3_C Domain P23396_105-188 6.1e-23 1 No_clan D 105 188 1z   
KH_2 Domain P23396_20-96 2e-11 1 CL0007 D 20 96 1   
RS4NT Domain P22090_3-39 7.1e-22 1 No_clan E 3 39 1   
S4 Domain 0.00016 0 CL0492 E 42 90 1z
Ribosomal_S7 Domain P46782_51-204 2.8e-37 1 No_clan F 51 204 1z   
Ribosomal_S27 Domain P62979_102-147 1.2e-28 1 CL0167 f 102 147 1z   
S4 Domain P46781_108-154 3.8e-11 1 CL0492 J 108 154 1   
S10_plectin Domain P46783_3-97 5.4e-51 1 No_clan K 3 98 1   
Ribosomal_S17 Domain P62280_75-144 1.6e-29 1 CL0021 L 75 144 1   
Ribosomal_L7Ae Domain P25398_16-111 2.2e-30 1 CL0101 M 16 111 1   
Ribosomal_S13_N Domain P62277_2-60 2.2e-31 1 No_clan N 2 60 1   
Ribosomal_S15 Domain P62277_70-148 9e-16 1 CL0600 N 70 149 1   
Ribosomal_S19 Domain P62841_43-128 8.9e-41 1 No_clan P 43 128 1   
Ribosomal_S8 Domain P62244_5-130 2.1e-22 1 No_clan W 5 130 1   
Ribosomal_S26e Family P62854_2-102 1.6e-51 1 No_clan a 2 98 1z   
Ribosomal_S2 Family P08865_111-184 6.9e-13 1 CL0067 A 111 184 1   
Ribosomal_S2 Family P08865_18-118 3.6e-11 1 CL0067 A 18 118 1z   
40S_SA_C Family P08865_202-217 3.2e-05 1 No_clan A 202 219   
Ribosomal_S3Ae Family P61247_21-221 3.9e-106 1 No_clan B 22 221 1z   
Ribosomal_S27e Family P42677_28-82 1.2e-30 1 CL0167 b 28 82 1z   
Ribosomal_S28e Family P62857_8-68 1.1e-34 1 CL0021 c 7 67 1z   
Ribosomal_S14 Family P62273_6-55 1.9e-15 1 No_clan d 6 55 1   
Ribosomal_S4e Family P22090_95-169 1.2e-37 1 No_clan E 95 169 1   
Ribosomal_S30 Family P62861_4-58 3.1e-30 1 No_clan e 3 57 1z   
40S_S4_C Family P22090_212-258 1.1e-28 1 No_clan E 212 258 1   
KOW Family P22090_177-211 1.9e-05 1 CL0107 E 177 211 1   
Ribosomal_S6e Family P62753_1-126 7.6e-70 1 No_clan G 1 126 1   
Ribosomal_S7e Family P62081_8-191 2.9e-92 1 CL0652 H 12 191 1   
Ribosomal_S8e Family P62241_2-190 3.1e-62 1 No_clan I 2 190 1   
Ribosomal_S4 Family P46781_9-140 9.4e-06 1 CL0492 J 9 107 1   
Ribosomal_S17_N Family P62280_5-73 2.2e-36 1 No_clan L 6 73 1   
Ribosomal_S11 Family P62263_29-147 2.6e-47 1 CL0267 O 29 147 1z   
Ribosomal_S9 Family P62249_14-146 4.2e-34 1 CL0329 Q 14 146 1   
Ribosomal_S17e Family P08708_2-122 2.1e-69 1 No_clan R 2 119 1   
Ribosomal_S13 Family P62269_14-142 2.4e-56 1 CL0303 S 14 142 1   
Ribosomal_S19e Family P39019_5-141 1.4e-58 1 CL0123 T 5 141 1   
Ribosomal_S10 Family P60866_21-115 2.5e-31 1 No_clan U 21 115 1   
Ribosomal_S21e Family P63220_1-80 2.8e-43 1 No_clan V 1 80 1   
Ribosom_S12_S23 Family P62266_29-140 1.1e-51 1 CL0021 X 29 140 1   
Ribosomal_S24e Family P62847_24-102 5.3e-46 1 No_clan Y 24 102 1   
Ribosomal_S25 Family P62851_42-112 6e-38 1 CL0123 Z 41 112 1z   
WD40 Repeat P63244_224-260 6.8e-09 1 CL0186 g 95 133 1   
WD40 Repeat P63244_224-260 9.1e-09 1 CL0186 g 53 91 1   
WD40 Repeat P63244_224-260 3.6e-05 1 CL0186 g 136 178 1   
WD40 Repeat P63244_224-260 4.7e-05 1 CL0186 g 182 220 1   
WD40 Repeat P63244_224-260 0.00011 1 CL0186 g 224 260 1   
SCOP domains
No SCOP domains
GO terms
No GO terms
Sequences
Download file with secondary structure created by Stride  
5flx.pdb1.pdb:   [ download sequences in FASTA format ]
a (protein): 
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b (protein): 
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C (protein): 
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d (protein): 
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E (protein): 
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f (protein): 
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g (protein): 
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H (protein): 
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I (protein): 
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J (protein): 
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K (protein): 
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L (protein): 
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M (protein): 
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N (protein): 
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O (protein): 
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P (protein): 
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Q (protein): 
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R (protein): 
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S (protein): 
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T (protein): 
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U (protein): 
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V (protein): 
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W (protein): 
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X (protein): 
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Y (protein): 
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1 (rna): 
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z (rna): 
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