General information
PDB ID 5GAG
Title RNC IN COMPLEX WITH SRP-SR IN THE CLOSED STATE
PDB header RIBOSOME
Date 2015-11-26
Experimental method ELECTRON MICROSCOPY
Resolution (A) 3.8
Kind rna
Organism ESCHERICHIA COLI, ESCHERICHIA COLI (STRAIN K12)
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
PRIDB
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb5gag.pdb CDEFGHIJKLMNOPQRSTUVWXYZabcdefik 12AB 0
Biounits:
5gag.pdb1.pdb CDEFGHIJKLMNOPQRSTUVWXYZabcdefik 12AB 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Ribosomal_L30 Domain P0AG51_5-55 2.7e-19 1 No_clan a 5 55 A   
Ribosomal_L2_C Domain P60422_125-249 9.6e-56 1 CL0107 C 125 249 A   
Ribosomal_L2 Domain P60422_42-118 7.8e-34 1 CL0021 C 42 118 A   
Ribosomal_L5_C Domain P62399_84-177 5.3e-41 1 No_clan F 84 177 AB   
Ribosomal_L5 Domain P62399_24-80 9.7e-29 1 CL0652 F 24 80 AB   
Ribosomal_L36 Domain P0A7Q6_1-38 2.3e-20 1 No_clan f 1 38 AB   
Ribosomal_L6 Domain P0AG55_90-165 7e-19 1 No_clan G 90 165 A   
Ribosomal_L6 Domain P0AG55_11-82 1e-18 1 No_clan G 11 82 A   
Ribosomal_L9_C Domain P0A7R1_63-148 2.1e-25 1 No_clan H 63 148 A   
Ribosomal_L9_N Domain P0A7R1_1-47 3.1e-22 1 No_clan H 1 47 A   
SRP_SPB Domain P0AGD7_328-427 2.6e-27 1 No_clan i 328 427 1A   
Ribosomal_L11_N Domain P0A7J7_8-67 1.1e-29 1 No_clan J 9 67 A   
Ribosomal_L11 Domain P0A7J7_72-140 3.9e-24 1 No_clan J 72 140 A   
Ribosomal_L14 Domain P0ADY3_2-122 7e-55 1 No_clan L 1 123 A   
Ribosomal_L22 Domain P61175_5-108 7.6e-38 1 No_clan T 5 108 A   
Ribosomal_L25p Domain P68919_4-91 2.7e-25 1 No_clan W 4 91 B   
Ribosomal_L32p Family P0A7N4_2-57 1.8e-19 1 CL0167 b 2 57 A   
Ribosomal_L33 Family P0A7N9_7-53 6.7e-19 1 CL0167 c 7 53 A   
Ribosomal_L34 Family P0A7P5_1-44 1.7e-24 1 No_clan d 1 44 A   
Ribosomal_L3 Family P60438_4-185 0.00000000000001 1 CL0575 D 4 185 A   
Ribosomal_L4 Family P60723_12-199 3.1e-64 1 No_clan E 12 199 A   
Ribosomal_L35p Family P0A7Q1_2-62 2.4e-22 1 No_clan e 2 62 A   
Ribosomal_L10 Family P0A7J3_3-101 1.6e-26 1 No_clan I 3 101 A   
Ribosomal_L13 Family P0AA10_14-138 5e-57 1 No_clan K 14 138 A   
Ribosomal_L27A Family P02413_27-144 3.4e-32 1 CL0588 M 27 144 A   
Ribosomal_L16 Family P0ADY7_4-131 2.8e-47 1 No_clan N 4 131 AB   
Ribosomal_L17 Family P0AG44_20-116 1.2e-34 1 No_clan O 20 116 A   
Ribosomal_L18p Family P0C018_1-117 7.7e-44 1 CL0267 P 1 117 AB   
Ribosomal_L19 Family P0A7K6_3-113 4.4e-50 1 CL0107 Q 3 113 A   
Ribosomal_L20 Family P0A7L3_3-109 5.1e-49 1 No_clan R 3 109 A   
Ribosomal_L21p Family P0AG48_1-101 1.3e-37 1 No_clan S 1 101 A   
Ribosomal_L23 Family P0ADZ0_9-95 3.7e-31 1 No_clan U 9 95 A   
ribosomal_L24 Family P60624_39-103 1.6e-23 1 No_clan V 39 103 A   
KOW Family P60624_7-37 0.000074 1 CL0107 V 7 37 A   
Ribosomal_L27 Family P0A7L8_7-82 3.9e-34 1 No_clan X 10 82 AB   
Ribosomal_L28 Family P0A7M2_3-62 1.8e-25 1 No_clan Y 3 62 A   
Ribosomal_L29 Family P0A7M6_4-60 6e-23 1 CL0346 Z 4 60 A   
SCOP domains
No SCOP domains
GO terms
No GO terms
Sequences
Download file with secondary structure created by Stride  
5gag.pdb1.pdb:   [ download sequences in FASTA format ]
C (protein): 
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D (protein): 
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E (protein): 
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f (protein): 
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G (protein): 
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H (protein): 
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i (protein): 
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J (protein): 
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K (protein): 
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L (protein): 
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M (protein): 
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N (protein): 
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O (protein): 
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P (protein): 
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Q (protein): 
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R (protein): 
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S (protein): 
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T (protein): 
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U (protein): 
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V (protein): 
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W (protein): 
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X (protein): 
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Y (protein): 
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Z (protein): 
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1 (rna): 
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2 (rna): 
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A (rna): 
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B (rna): 
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