General information
PDB ID 5GAP
Title BODY REGION OF THE U4/U6.U5 TRI-SNRNP
PDB header TRANSCRIPTION
Date 2015-12-15
Experimental method ELECTRON MICROSCOPY
Resolution (A) 3.6
Kind rna
Organism SACCHAROMYCES CEREVISIAE
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
PRIDB
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb5gap.pdb xAHJDFGKB VWU 0
Biounits:
5gap.pdb1.pdb xAHJDFGKB VWU 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
PRP8_domainIV Domain P33334_1832-2061 8.1e-122 1 No_clan A 1832 2061 W   
U6-snRNA_bdg Domain P33334_1514-1672 1.5e-85 1 CL0363 A 1514 1672 VW   
U5_2-snRNA_bdg Domain P33334_1282-1415 2e-69 1 No_clan A 1282 1415 UW   
PROCN Domain P33334_751-874 4.5e-61 1 No_clan A 751 874   
RRM_4 Domain P33334_1059-1150 1.7e-47 1 No_clan A 1059 1150   
DIM1 Domain Q06819_5-137 3.6e-67 1 CL0172 D 5 137 W   
PRP3 Domain Q03338_150-318 7.5e-43 1 No_clan G 152 318 VW   
DUF1115 Domain Q03338_340-466 3.3e-31 1 CL0622 G 340 467 W   
Ribosomal_L7Ae Domain P39990_18-112 1.1e-27 1 CL0101 K 18 112 VW   
Nop Family P49704_101-343 3.7e-63 1 No_clan F 101 343 V   
Prp31_C Family P49704_350-457 4.5e-26 1 No_clan F 350 455 VW   
Myb_Cef Family 0.00095 0 No_clan G 221 366 VW
WD40 Repeat P20053_339-377 0.000000087 1 CL0186 H 339 377   
WD40 Repeat P20053_427-465 0.00000093 1 CL0186 H 427 465   
WD40 Repeat P20053_255-293 0.00043 1 CL0186 H 255 293   
WD40 Repeat P20053_298-335 0.00082 1 CL0186 H 298 335   
SCOP domains
No SCOP domains
GO terms
No GO terms
Sequences
Download file with secondary structure created by Stride  
5gap.pdb1.pdb:   [ download sequences in FASTA format ]
A (protein): 
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B (protein): 
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D (protein): 
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F (protein): 
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G (protein): 
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H (protein): 
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J (protein): 
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K (protein): 
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x (protein): 
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U (rna): 
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V (rna): 
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W (rna): 
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