General information
PDB ID 5GTC
Title CRYSTAL STRUCTURE OF COMPLEX BETWEEN DMAP-SH CONJUGATED WITH A KAPOSI'S SARCOMA HERPESVIRUS LANA PEPTIDE (5-15) AND NUCLEOSOME CORE PARTICLE
PDB header STRUCTURAL PROTEIN/DNA
Date 2016-08-19
Experimental method X-RAY DIFFRACTION
Resolution (A) 2.7
Kind dna
Organism HOMO SAPIENS, HUMAN HERPESVIRUS 8
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb5gtc.pdb ABCDEFGHK IJ 0
Biounits:
5gtc.pdb1.pdb ABCDEFGHK IJ 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Histone Domain P68431_39-132 9.1e-47 1 CL0012 A 38 131 IJ  H-Bb H-Mj S-Bb L-Bb L-Mn 
CENP-T_C Domain P62805_26-99 0.0000000085 1 CL0012 B 26 98 IJ  H-Bb S-Bb L-Bb 
Histone Domain P04908_16-91 2.1e-16 1 CL0012 C 11 90 IJ  H-Bb S-Bb L-Bb 
Histone Domain P06899_33-102 8.2e-22 1 CL0012 D 32 101 IJ  H-Bb H-Mj L-Bb L-Mn 
Histone Domain P68431_39-132 9.5e-47 1 CL0012 E 38 131 IJ  H-Bb H-Mj S-Bb L-Bb L-Mn 
CENP-T_C Domain P62805_19-99 0.00000001 1 CL0012 F 23 98 IJ  H-Bb S-Bb L-Bb 
Histone Domain P04908_16-91 2.5e-16 1 CL0012 G 12 90 IJ  H-Bb S-Bb L-Bb 
Histone Domain P06899_33-102 1.3e-21 1 CL0012 H 33 101 IJ  H-Bb H-Mj S-Bb L-Bb 
Histone_H2A_C Family P04908_92-119 1.5e-17 1 No_clan C 91 118   
Histone_H2A_C Family P04908_92-119 1.5e-17 1 No_clan G 91 118   
SCOP domains
No SCOP domains
GO terms
No GO terms
Sequences
Download file with secondary structure created by Stride  
5gtc.pdb1.pdb:   [ download sequences in FASTA format ]
I (dna): 
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J (dna): 
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A (protein): 
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B (protein): 
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C (protein): 
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D (protein): 
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E (protein): 
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F (protein): 
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G (protein): 
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H (protein): 
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K (protein): 
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