General information
PDB ID 5HL7
Title THE CRYSTAL STRUCTURE OF THE LARGE RIBOSOMAL SUBUNIT OF STAPHYLOCOCCUS AUREUS IN COMPLEX WITH LEFAMULIN
PDB header RIBOSOME
Date 2016-01-14
Experimental method X-RAY DIFFRACTION
Resolution (A) 3.55
Kind rna
Organism STAPHYLOCOCCUS AUREUS SUBSP. AUREUS NCTC 8325
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
PRIDB
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb5hl7.pdb ABCDEGHIJKLMNOPQRSTUVWZ234 XY 0
Biounits:
5hl7.pdb1.pdb ABCDEGHIJKLMNOPQRSTUVWZ234 XY 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Ribosomal_L36 Domain Q2FW29_1-37 1.8e-18 1 No_clan 4 1 36 X   
Ribosomal_L2_C Domain P60430_125-251 3e-57 1 CL0107 A 125 251 X   
Ribosomal_L2 Domain P60430_42-118 1.4e-34 1 CL0021 A 42 118 X   
Ribosomal_L5_C Domain Q2FW18_84-170 2.1e-38 1 No_clan D 84 169 XY   
Ribosomal_L5 Domain Q2FW18_24-80 7.6e-29 1 CL0652 D 24 80 XY   
Ribosomal_L6 Domain Q2FW21_90-165 2.9e-20 1 No_clan E 90 165 X   
Ribosomal_L6 Domain Q2FW21_18-82 1.1e-18 1 No_clan E 18 82 X   
Ribosomal_L14 Domain Q2FW16_1-122 1.3e-53 1 No_clan H 1 122 X   
Ribosomal_L22 Domain Q2FW11_5-108 1e-35 1 No_clan P 5 108 X   
Ribosomal_L25p Domain Q2G0S0_4-91 1.5e-22 1 No_clan S 4 91 Y   
Ribosomal_TL5_C Domain Q2G0S0_99-169 2e-21 1 No_clan S 99 169   
Ribosomal_L30 Domain P0A0G2_4-54 5.7e-22 1 No_clan W 4 54 XY   
Ribosomal_L34 Family Q2FUQ0_2-45 2e-22 1 No_clan 2 2 44 X   
Ribosomal_L35p Family Q2FXQ0_2-61 2.9e-24 1 No_clan 3 2 61 X   
Ribosomal_L3 Family Q2FW06_90-216 0.0000000000000051 1 CL0575 B 87 194 X   
Ribosomal_L4 Family Q2FW07_17-201 2.3e-70 1 No_clan C 17 201 X   
Ribosomal_L13 Family Q2FW38_15-139 7.2e-54 1 No_clan G 15 139 X   
Ribosomal_L27A Family P0A0F8_27-131 6.4e-33 1 CL0588 I 27 131 X   
Ribosomal_L16 Family Q2FW13_4-132 1.3e-51 1 No_clan J 4 132 XY   
Ribosomal_L17 Family Q2FW33_16-122 6.9e-37 1 No_clan K 16 122 X   
Ribosomal_L18p Family Q2FW22_5-110 3.1e-41 1 CL0267 L 5 110 XY   
Ribosomal_L19 Family Q2FZ42_5-110 1.2e-50 1 CL0107 M 5 110 X   
Ribosomal_L20 Family Q2FXQ1_3-109 2.1e-49 1 No_clan N 3 109 X   
Ribosomal_L21p Family Q2FXS8_1-100 2.9e-41 1 No_clan O 1 100 X   
Ribosomal_L23 Family Q2FW08_5-89 4.3e-32 1 No_clan Q 5 89 X   
ribosomal_L24 Family Q2FW17_38-101 7.5e-31 1 No_clan R 38 101 X   
KOW Family Q2FW17_5-36 0.000000015 1 CL0107 R 5 36 X   
Ribosomal_L27 Family Q2FXT0_19-89 7.6e-31 1 No_clan T 19 89 X   
Ribosomal_L28 Family Q2FZ60_10-55 0.000000000000035 1 No_clan U 13 54 X   
Ribosomal_L29 Family Q2FW14_4-60 2.3e-24 1 CL0346 V 4 60 X   
Ribosomal_L32p Family Q2FZF1_2-44 5.6e-20 1 CL0167 Z 2 44 X   
SCOP domains
No SCOP domains
GO terms
No GO terms
Sequences
Download file with secondary structure created by Stride  
5hl7.pdb1.pdb:   [ download sequences in FASTA format ]
2 (protein): 
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3 (protein): 
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4 (protein): 
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A (protein): 
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B (protein): 
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C (protein): 
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D (protein): 
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E (protein): 
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G (protein): 
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H (protein): 
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I (protein): 
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J (protein): 
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K (protein): 
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L (protein): 
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M (protein): 
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N (protein): 
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O (protein): 
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P (protein): 
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Q (protein): 
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R (protein): 
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S (protein): 
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T (protein): 
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U (protein): 
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V (protein): 
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W (protein): 
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Z (protein): 
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X (rna): 
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Y (rna): 
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