General information
PDB ID 5HOD
Title STRUCTURE OF LHX4 TRANSCRIPTION FACTOR COMPLEXED WITH DNA
PDB header TRANSCRIPTION
Date 2016-01-19
Experimental method X-RAY DIFFRACTION
Resolution (A) 2.68
Kind dna
Organism HOMO SAPIENS
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb5hod.pdb AD BC 0
Biounits:
5hod.pdb1.pdb AD BC 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Homeodomain Domain Q969G2_159-214 8.7e-23 1 CL0123 A 86 142 BC  H-Bb H-Mj L-Bb L-Mn 
Homeodomain Domain Q969G2_159-214 1.8e-22 1 CL0123 D 87 142 BC  H-Bb H-Mj L-Bb 
SCOP domains
No SCOP domains
GO terms
Protein chains: GO type: GO description:
A/D=156-216 C nuclear chromatin
A/D=156-216 C nucleus
A/D=156-216 F DNA-binding transcription activator activity, RNA polymerase II-specific
A/D=156-216 F DNA-binding transcription factor activity, RNA polymerase II-specific
A/D=156-216 F metal ion binding
A/D=156-216 F methyl-CpG binding
A/D=156-216 F RNA polymerase II transcription regulatory region sequence-specific DNA binding
A/D=156-216 F sequence-specific DNA binding
A/D=156-216 F sequence-specific double-stranded DNA binding
A/D=156-216 P animal organ morphogenesis
A/D=156-216 P medial motor column neuron differentiation
A/D=156-216 P motor neuron axon guidance
A/D=156-216 P negative regulation of apoptotic process
A/D=156-216 P neuron differentiation
A/D=156-216 P placenta development
A/D=156-216 P positive regulation of transcription by RNA polymerase II
Sequences
Download file with secondary structure created by Stride  
5hod.pdb1.pdb:   [ download sequences in FASTA format ]
B (dna): 
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C (dna): 
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A (protein): 
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D (protein): 
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