General information
PDB ID 5I42
Title STRUCTURE OF HIV-1 REVERSE TRANSCRIPTASE IN COMPLEX WITH A DNA APTAMER, AZTTP, AND CA(2+) ION
PDB header TRANSFERASE/DNA
Date 2016-02-11
Experimental method X-RAY DIFFRACTION
Resolution (A) 3.3
Kind dna
Organism SYNTHETIC CONSTRUCT
Download
complex
View in
Jmol
Quick Links
PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb5i42.pdb ABCD EF 0
Biounits:
5i42.pdb1.pdb AB E 1
5i42.pdb2.pdb CD F 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
RVT_connect Domain P03366_917-1018 2.2e-59 1 No_clan A 318 419 E  S-Bb L-Bb 
RNase_H Domain P03366_1035-1153 2.4e-28 1 CL0219 A 436 554 E  H-Bb L-Bb 
RVT_thumb Domain P03366_840-903 5.8e-20 1 No_clan A 241 304 E  H-Bb 
RVT_connect Domain P03366_917-1018 1.3e-59 1 No_clan B 318 419   
RVT_thumb Domain P03366_840-903 3.8e-20 1 No_clan B 241 304   
RVT_connect Domain P03366_917-1018 2.2e-59 1 No_clan C 318 419 F  S-Bb L-Bb 
RNase_H Domain P03366_1035-1153 2.4e-28 1 CL0219 C 436 554 F  H-Bb L-Bb 
RVT_thumb Domain P03366_840-903 5.8e-20 1 No_clan C 241 304 F  L-Bb 
RVT_connect Domain P03366_917-1018 1.3e-59 1 No_clan D 318 419   
RVT_thumb Domain P03366_840-903 3.8e-20 1 No_clan D 241 304   
RVT_1 Family P03366_662-833 1.4e-34 1 CL0027 A 63 234 E   
RVT_1 Family P03366_662-833 6.1e-33 1 CL0027 B 63 253   
RVT_1 Family P03366_662-833 1.4e-34 1 CL0027 C 63 234 F   
RVT_1 Family P03366_662-833 6.1e-33 1 CL0027 D 63 253   
SCOP domains
No SCOP domains
GO terms
No GO terms
Sequences
Download file with secondary structure created by Stride  
5i42.pdb1.pdb:   [ download sequences in FASTA format ]
E (dna): 
Click "SHOW" for view sequence
A (protein): 
Click "SHOW" for view sequence
B (protein): 
Click "SHOW" for view sequence
5i42.pdb2.pdb:   [ download sequences in FASTA format ]
F (dna): 
Click "SHOW" for view sequence
C (protein): 
Click "SHOW" for view sequence
D (protein): 
Click "SHOW" for view sequence
© NPIDB team 2003 - 2019

text