General information
PDB ID 5IPL
Title SIGMAS-TRANSCRIPTION INITIATION COMPLEX WITH 4-NT NASCENT RNA
PDB header TRANSCRIPTION, TRANSFERASE/DNA/RNA
Date 2016-03-09
Experimental method X-RAY DIFFRACTION
Resolution (A) 3.6
Kind hybrid
Organism ESCHERICHIA COLI, SYNTHETIC CONSTRUCT
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
PRIDB
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb5ipl.pdb ABCDEF 12 3 0
Biounits:
5ipl.pdb1.pdb ABCDEF 12 3 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
RNA_pol_L Domain P0A7Z4_29-228 1.2e-24 1 CL0509 A 29 228   
RNA_pol_A_bac Domain P0A7Z4_58-186 8e-24 1 No_clan A 58 178   
RNA_pol_L Domain P0A7Z4_29-228 1.2e-24 1 CL0509 B 29 228   
RNA_pol_A_bac Domain P0A7Z4_58-186 7.5e-24 1 No_clan B 58 185   
RNA_pol_Rpb2_6 Domain P0A8V2_717-1264 1.4e-160 1 CL0410 C 717 1264   
RNA_pol_Rpb2_3 Domain P0A8V2_513-581 1.5e-30 1 No_clan C 513 581 2   
RNA_pol_Rpb2_45 Domain P0A8V2_591-656 6e-28 1 No_clan C 591 656   
RNA_pol_Rpb2_7 Domain P0A8V2_1266-1342 1.9e-27 1 No_clan C 1266 1342 2   
RNA_pol_Rpb2_2 Domain P0A8V2_329-454 0.0000000000000054 1 No_clan C 329 454 1   
RNA_pol_Rpb2_2 Domain P0A8V2_151-276 0.00000023 1 No_clan C 151 276 1   
RNA_pol_Rpb1_1 Domain P0A8T7_15-342 7.6e-90 1 No_clan D 15 342 2   
RNA_pol_Rpb1_5 Domain P0A8T7_766-1317 2.4e-72 1 No_clan D 766 1317 23   
RNA_pol_Rpb1_2 Domain P0A8T7_386-486 3.1e-27 1 No_clan D 386 486 2   
RNA_pol_Rpb1_3 Domain P0A8T7_489-644 3.3e-27 1 No_clan D 489 644   
RNA_pol_Rpb1_4 Domain P0A8T7_673-764 1.5e-18 1 No_clan D 673 764   
RNA_pol_Rpb1_2 Domain P0A8T7_344-401 0.000000098 1 No_clan D 344 401   
Sigma70_r2 Domain P13445_94-164 2.6e-21 1 CL0123 F 94 164 12  H-Bb H-Mj H-Mn 
Sigma70_r4 Domain P13445_262-315 0.000000000000002 1 CL0123 F 262 315   
RNA_pol_Rpb2_1 Family P0A8V2_26-500 2.3e-58 1 No_clan C 26 500 1   
RNA_pol_Rpb6 Family P0A800_8-60 0.0000000000000013 1 No_clan E 8 60   
Sigma70_r3 Family P13445_173-250 8.7e-21 1 CL0123 F 173 250 2   
Sigma70_r1_2 Family P13445_56-89 0.000000000023 1 No_clan F 56 89 1   
SCOP domains
No SCOP domains
GO terms
No GO terms
Sequences
Download file with secondary structure created by Stride  
5ipl.pdb1.pdb:   [ download sequences in FASTA format ]
1 (dna): 
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2 (dna): 
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A (protein): 
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B (protein): 
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C (protein): 
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D (protein): 
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E (protein): 
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F (protein): 
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3 (rna): 
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