General information
PDB ID 5IUD
Title HUMAN DNA POLYMERASE ALPHA IN BINARY COMPLEX WITH A DNA:DNA TEMPLATE- PRIMER
PDB header TRANSFERASE/DNA
Date 2016-03-17
Experimental method X-RAY DIFFRACTION
Resolution (A) 3.3
Kind dna
Organism HOMO SAPIENS
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb5iud.pdb ADGJ BCEFHIKL 0
Biounits:
5iud.pdb1.pdb A BC 1
5iud.pdb2.pdb D EF 1
5iud.pdb3.pdb G HI 1
5iud.pdb4.pdb J KL 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
DNA_pol_B Family P09884_774-1227 8.7e-127 1 CL0194 A 774 1227 BC  H-Bb S-Bb L-Bb L-Mn 
DNA_pol_B_exo1 Family P09884_369-711 1.3e-59 1 CL0219 A 369 711 C  L-Bb 
DNA_pol_B Family P09884_774-1227 4.4e-127 1 CL0194 D 774 1227 EF  H-Bb S-Bb L-Bb L-Mn 
DNA_pol_B_exo1 Family P09884_369-711 1.6e-61 1 CL0219 D 369 711 FE  L-Bb 
DNA_pol_B Family P09884_774-1227 1.5e-127 1 CL0194 G 774 1227 HI  H-Bb S-Bb L-Bb L-Mn 
DNA_pol_B_exo1 Family P09884_369-711 3.8e-61 1 CL0219 G 369 711   
DNA_pol_B Family P09884_774-1227 3.4e-127 1 CL0194 J 774 1227 KL  H-Bb S-Bb L-Bb L-Mn 
DNA_pol_B_exo1 Family P09884_369-711 1.8e-59 1 CL0219 J 369 711 L  L-Bb 
SCOP domains
No SCOP domains
GO terms
Protein chains: GO type: GO description:
A/D/G/J=338-1255 C alpha DNA polymerase:primase complex
A/D/G/J=338-1255 C cytosol
A/D/G/J=338-1255 C nuclear envelope
A/D/G/J=338-1255 C nuclear matrix
A/D/G/J=338-1255 C nucleolus
A/D/G/J=338-1255 C nucleoplasm
A/D/G/J=338-1255 C nucleus
A/D/G/J=338-1255 F 4 iron, 4 sulfur cluster binding
A/D/G/J=338-1255 F chromatin binding
A/D/G/J=338-1255 F DNA binding
A/D/G/J=338-1255 F DNA replication origin binding
A/D/G/J=338-1255 F DNA-directed DNA polymerase activity
A/D/G/J=338-1255 F metal ion binding
A/D/G/J=338-1255 F nucleotide binding
A/D/G/J=338-1255 F protein kinase binding
A/D/G/J=338-1255 F purine nucleotide binding
A/D/G/J=338-1255 F pyrimidine nucleotide binding
A/D/G/J=338-1255 F single-stranded DNA binding
A/D/G/J=338-1255 P DNA repair
A/D/G/J=338-1255 P DNA replication
A/D/G/J=338-1255 P DNA replication initiation
A/D/G/J=338-1255 P DNA replication, synthesis of RNA primer
A/D/G/J=338-1255 P DNA strand elongation involved in DNA replication
A/D/G/J=338-1255 P DNA synthesis involved in DNA repair
A/D/G/J=338-1255 P double-strand break repair via nonhomologous end joining
A/D/G/J=338-1255 P G1/S transition of mitotic cell cycle
A/D/G/J=338-1255 P lagging strand elongation
A/D/G/J=338-1255 P leading strand elongation
A/D/G/J=338-1255 P mitotic DNA replication initiation
A/D/G/J=338-1255 P regulation of transcription involved in G1/S transition of mitotic cell cycle
A/D/G/J=338-1255 P regulation of type I interferon production
A/D/G/J=338-1255 P telomere maintenance via semi-conservative replication
A/D/G/J=338-1255 P viral process
Sequences
Download file with secondary structure created by Stride  
5iud.pdb1.pdb:   [ download sequences in FASTA format ]
B (dna): 
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C (dna): 
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A (protein): 
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5iud.pdb2.pdb:   [ download sequences in FASTA format ]
E (dna): 
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F (dna): 
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D (protein): 
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5iud.pdb3.pdb:   [ download sequences in FASTA format ]
H (dna): 
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I (dna): 
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G (protein): 
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5iud.pdb4.pdb:   [ download sequences in FASTA format ]
K (dna): 
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L (dna): 
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J (protein): 
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