General information
PDB ID 5IY8
Title HUMAN HOLO-PIC IN THE INITIAL TRANSCRIBING STATE
PDB header TRANSCRIPTION, TRANSFERASE/DNA
Date 2016-03-24
Experimental method ELECTRON MICROSCOPY
Resolution (A) 7.9
Kind dna
Organism HOMO SAPIENS
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb5iy8.pdb ABCDEFGHIJKLMNOPQRSTUVW0123 XY 0
Biounits:
5iy8.pdb1.pdb ABCDEFGHIJKLMNOPQRSTUVW0123 XY 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Tfb4 Domain Q13889_8-231 2.8e-46 1 CL0128 3 72 231   
RNA_pol_Rpb1_1 Domain P24928_15-354 1.5e-109 1 No_clan A 15 354 XY  H-Bb S-Bb 
RNA_pol_Rpb1_5 Domain P24928_830-1427 4.4e-101 1 No_clan A 830 1427 XY  L-Bb 
RNA_pol_Rpb1_2 Domain P24928_356-521 1.9e-74 1 No_clan A 356 521 Y   
RNA_pol_Rpb1_6 Domain P24928_896-1079 1.5e-67 1 No_clan A 896 1079   
RNA_pol_Rpb1_7 Domain P24928_1164-1299 9.9e-55 1 No_clan A 1164 1299   
RNA_pol_Rpb1_3 Domain P24928_524-692 5e-50 1 No_clan A 524 692   
RNA_pol_Rpb1_4 Domain P24928_716-823 5.5e-38 1 No_clan A 716 823   
RNA_pol_Rpb2_6 Domain P30876_707-1080 5.7e-128 1 CL0410 B 707 1080 Y   
RNA_pol_Rpb2_2 Domain P30876_201-394 8.3e-56 1 No_clan B 201 394 X   
RNA_pol_Rpb2_7 Domain P30876_1082-1174 7.1e-34 1 No_clan B 1082 1174 Y   
RNA_pol_Rpb2_4 Domain P30876_567-629 5.3e-24 1 No_clan B 567 629   
RNA_pol_Rpb2_3 Domain P30876_468-532 1.5e-23 1 No_clan B 468 532 XY   
RNA_pol_Rpb2_5 Domain P30876_653-700 1.2e-18 1 No_clan B 653 700   
RNA_pol_A_bac Domain P19387_50-177 4.8e-40 1 No_clan C 50 177   
RNA_pol_L Domain P19387_20-256 0.000000000000002 1 CL0509 C 20 256   
RNA_pol_Rpb5_C Domain P19388_137-209 1.4e-35 1 No_clan E 137 209   
RNA_pol_Rpb5_N Domain P19388_4-94 1.6e-34 1 CL0236 E 4 94 X  H-Bb 
S1 Domain P62487_78-161 1.3e-20 1 CL0021 G 78 161   
SHS2_Rpb7-N Domain P62487_8-77 0.0000000000000065 1 CL0319 G 8 77   
RNA_POL_M_15KD Domain P36954_14-51 3.9e-17 1 CL0167 I 14 51   
TFIIS_C Domain P36954_84-124 0.0000000000093 1 CL0167 I 84 124   
RNA_pol_N Domain P62875_1-59 6.7e-34 1 No_clan J 1 59   
RNA_pol_L_2 Domain P52435_30-104 2.8e-28 1 CL0509 K 30 104   
DNA_RNApol_7kD Domain P53803_17-48 1.2e-17 1 CL0167 L 17 48   
TFIIB Domain Q00403_121-191 1.4e-24 1 CL0065 M 121 191 XY  H-Bb L-Bb 
TFIIB Domain Q00403_215-285 4.9e-24 1 CL0065 M 215 285 Y  H-Bb H-Mj L-Bb L-Mj 
TF_Zn_Ribbon Domain Q00403_13-54 0.000000000000038 1 CL0167 M 13 55 Y   
TFIIA_gamma_N Domain P52657_3-49 1e-23 1 No_clan O 2 49   
TFIIA_gamma_C Domain P52657_57-99 2.3e-23 1 No_clan O 52 99   
TBP Domain P20226_162-244 1.2e-32 1 CL0407 P 162 244 XY   
TBP Domain P20226_252-335 9.4e-32 1 CL0407 P 252 335 XY  S-Bb S-Mn L-Mj L-Mn 
TF_Zn_Ribbon Domain P29083_127-176 0.000000000000043 1 CL0167 Q 127 176   
TFIIE_beta Domain P29084_75-145 1.5e-24 1 CL0123 R 75 145   
TFIIS_M Domain P23193_138-248 5.4e-39 1 No_clan U 138 248   
TFIIS_C Domain P23193_261-299 2.8e-19 1 CL0167 U 261 299   
ERCC3_RAD25_C Domain P19447_496-718 4e-122 1 CL0023 V 496 718 Y  H-Bb 
Helicase_C_2 Domain P18074_524-700 9.4e-46 1 CL0023 W 524 700   
HBB Domain P18074_269-413 4.4e-21 1 No_clan W 269 395   
Ssl1 Family Q13888_64-241 2.9e-88 1 CL0128 0 64 241   
Tfb5 Family Q6ZYL4_1-62 3.3e-25 1 No_clan 1 1 62   
Tfb2 Family Q92759_28-274 6.9e-41 1 No_clan 2 139 404   
Tfb2 Family 0.000000000012 1 No_clan 2 28 119
RNA_pol_Rpb2_1 Family P30876_38-442 5.5e-68 1 No_clan B 38 442 X   
RNA_pol_Rpb4 Family O15514_31-138 2.4e-25 1 CL0426 D 31 138   
RNA_pol_Rpb6 Family P61218_51-104 2.7e-16 1 No_clan F 51 104   
RNA_pol_Rpb8 Family P52434_7-147 2.6e-54 1 CL0021 H 7 147   
TFIIA Family P52655_307-376 8.2e-47 1 No_clan N 51 376 XY  S-Bb L-Bb 
TFIIA Family P52655_13-51 1.5e-17 1 No_clan N 13 308   
TFIIE_alpha Family P29083_16-123 2.4e-28 1 CL0123 Q 16 123   
TFIIF_alpha Family P35269_5-180 1.5e-47 1 CL0123 S 52 180   
TFIIF_beta Family P13984_176-238 3.7e-41 1 CL0123 T 95 238 XY  H-Bb L-Bb L-Mn 
ResIII Family P19447_313-472 0.0000000000000014 1 CL0023 V 313 472 XY  L-Bb L-Mn 
DEAD_2 Family P18074_72-256 1.5e-47 1 CL0023 W 72 256   
SCOP domains
No SCOP domains
GO terms
No GO terms
Sequences
Download file with secondary structure created by Stride  
5iy8.pdb1.pdb:   [ download sequences in FASTA format ]
X (dna): 
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Y (dna): 
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0 (protein): 
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1 (protein): 
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2 (protein): 
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3 (protein): 
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A (protein): 
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B (protein): 
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C (protein): 
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D (protein): 
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E (protein): 
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F (protein): 
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G (protein): 
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H (protein): 
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I (protein): 
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J (protein): 
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K (protein): 
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L (protein): 
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M (protein): 
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N (protein): 
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O (protein): 
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P (protein): 
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Q (protein): 
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R (protein): 
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S (protein): 
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T (protein): 
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U (protein): 
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V (protein): 
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W (protein): 
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