General information
PDB ID 5J70
Title THE CHD1 DNA-BINDING DOMAIN IN COMPLEX WITH 17MER DNA DUPLEX
PDB header CHROMATIN-BINDING PROTEIN/DNA
Date 2016-04-05
Experimental method X-RAY DIFFRACTION
Resolution (A) 2.96
Kind dna
Organism SYNTHETIC CONSTRUCT
Download
complex
View in
Jmol
Quick Links
PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb5j70.pdb AB WXYZ 0
Biounits:
5j70.pdb1.pdb A WX 1
5j70.pdb2.pdb B YZ 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Cdh1_DBD_1 Domain P32657_1010-1129 1.8e-46 1 CL0123 A 1010 1129 WX  H-Bb S-Bb L-Bb 
Myb_DNA-binding Domain P32657_1173-1202 8e-06 1 CL0123 A 1172 1201   
Cdh1_DBD_1 Domain P32657_1010-1129 1.8e-46 1 CL0123 B 1010 1129 YZ  H-Bb S-Bb L-Bb 
Myb_DNA-binding Domain P32657_1173-1202 7.9e-06 1 CL0123 B 1172 1201   
SCOP domains
No SCOP domains
GO terms
Protein chains: GO type: GO description:
A/B=1006-1274 C mitochondrion
A/B=1006-1274 C nuclear chromatin
A/B=1006-1274 C nucleolar chromatin
A/B=1006-1274 C SAGA complex
A/B=1006-1274 C SLIK (SAGA-like) complex
A/B=1006-1274 F ATP binding
A/B=1006-1274 F chromatin DNA binding
A/B=1006-1274 F DNA binding
A/B=1006-1274 F DNA-dependent ATPase activity
A/B=1006-1274 F helicase activity
A/B=1006-1274 F methylated histone binding
A/B=1006-1274 F nucleosome-dependent ATPase activity
A/B=1006-1274 F rDNA binding
A/B=1006-1274 F transcription regulatory region sequence-specific DNA binding
A/B=1006-1274 P ATP-dependent chromatin remodeling
A/B=1006-1274 P histone H2B conserved C-terminal lysine ubiquitination
A/B=1006-1274 P negative regulation of DNA-dependent DNA replication
A/B=1006-1274 P negative regulation of histone exchange
A/B=1006-1274 P negative regulation of histone H3-K14 acetylation
A/B=1006-1274 P negative regulation of histone H3-K9 acetylation
A/B=1006-1274 P nucleosome mobilization
A/B=1006-1274 P nucleosome organization
A/B=1006-1274 P nucleosome positioning
A/B=1006-1274 P regulation of chromatin organization
A/B=1006-1274 P regulation of nucleosome density
A/B=1006-1274 P regulation of transcriptional start site selection at RNA polymerase II promoter
A/B=1006-1274 P sister chromatid cohesion
A/B=1006-1274 P termination of RNA polymerase I transcription
A/B=1006-1274 P termination of RNA polymerase II transcription
A/B=1006-1274 P transcription elongation from RNA polymerase II promoter
Sequences
Download file with secondary structure created by Stride  
5j70.pdb1.pdb:   [ download sequences in FASTA format ]
W (dna): 
Click "SHOW" for view sequence
X (dna): 
Click "SHOW" for view sequence
A (protein): 
Click "SHOW" for view sequence
5j70.pdb2.pdb:   [ download sequences in FASTA format ]
Y (dna): 
Click "SHOW" for view sequence
Z (dna): 
Click "SHOW" for view sequence
B (protein): 
Click "SHOW" for view sequence
© NPIDB team 2003 - 2021

text