General information
PDB ID 5JB3
Title CRYO-EM STRUCTURE OF A FULL ARCHAEAL RIBOSOMAL TRANSLATION INITIATION COMPLEX IN THE P-REMOTE CONFORMATION
PDB header TRANSLATION
Date 2016-04-13
Experimental method ELECTRON MICROSCOPY
Resolution (A) 5.34
Kind rna
Organism PYROCOCCUS ABYSSI GE5, ESCHERICHIA COLI
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
PRIDB
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb5jb3.pdb MNQRABVWZDEFGIJC3LOPSTUXYHK016789 245 0
Biounits:
5jb3.pdb1.pdb MNQRABVWZDEFGIJC3LOPSTUXYHK016789 245 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
SUI1 Domain Q57902_24-96 9.6e-23 1 No_clan 1 23 95 25   
Ribosomal_L7Ae Domain Q8U160_17-111 3.1e-32 1 CL0101 3 17 111 2   
eIF-1a Domain Q9V138_22-85 1.4e-22 1 CL0021 6 22 85 2   
GTP_EFTU Domain Q980A5_7-204 3.1e-30 1 CL0023 7 7 204 4   
eIF2_C Domain Q980A5_327-413 6.7e-29 1 No_clan 7 327 413 2   
GTP_EFTU_D2 Domain Q980A5_235-310 0.00000011 1 CL0575 7 235 310 24   
S1 Domain Q97Z79_8-83 0.00000000044 1 CL0021 9 8 83 4   
S4 Domain P61992_103-152 2.9e-17 1 CL0492 D 103 152 2   
RS4NT Domain Q8U011_4-40 1.4e-17 1 No_clan E 4 40 2   
S4 Domain Q8U011_43-91 0.000000000001 1 CL0492 E 43 91 2   
Ribosomal_S5 Domain Q8U017_62-125 1.2e-21 1 CL0196 F 62 125 2   
Ribosomal_S5_C Domain Q8U017_146-217 3.8e-21 1 CL0329 F 146 216 2   
Ribosomal_S7 Domain Q8U0M8_46-215 1.2e-40 1 No_clan H 46 215 2   
Ribosomal_S8 Domain Q8U014_5-130 1.3e-27 1 No_clan I 5 130 2   
Ribosomal_S13_N Domain Q8TZD9_1-60 8.2e-28 1 No_clan Q 1 60 2   
Ribosomal_S15 Domain Q8TZD9_78-156 3.5e-20 1 CL0600 Q 78 156 2   
Ribosomal_S17 Domain Q8U008_36-104 1.9e-27 1 CL0021 R 36 104 2   
Ribosomal_S19 Domain Q8U002_34-115 7.5e-37 1 No_clan T 34 115 2   
Ribosomal_S27 Domain Q8U443_4-46 3.3e-22 1 CL0167 Y 4 46 2   
Ribosomal_S3_C Domain Q8U004_99-182 2.4e-23 1 No_clan Z 99 182 2   
KH_2 Domain Q8U004_16-90 0.0000000000000013 1 CL0007 Z 16 90   
Ribosomal_L41 Family 0.00091 0 CL0652 0 1 22 2
eIF-5_eIF-2B Family Q97W59_19-133 3.4e-31 1 No_clan 8 15 133 4   
EIF_2_alpha Family Q97Z79_121-235 1.9e-16 1 No_clan 9 121 235   
Ribosomal_S3Ae Family Q8TZE1_9-194 7.9e-68 1 No_clan A 9 194 2   
Ribosomal_S2 Family Q8U0F0_107-177 0.00000000000013 1 CL0067 B 107 177 2   
Ribosomal_S2 Family Q8U0F0_12-109 0.0000000001 1 CL0067 B 12 109 2   
Ribosomal_S4e Family Q8U011_96-173 1e-21 1 No_clan E 96 173 2   
KOW Family 0.00075 0 CL0107 E 181 216 2
Ribosomal_S6e Family Q8U3H8_4-125 7.2e-36 1 No_clan G 4 125 2   
Ribosomal_S8e Family Q8U1Y5_1-125 2.8e-33 1 No_clan J 1 125 2   
Ribosomal_S9 Family Q8U0E7_8-135 1.1e-30 1 CL0329 K 8 135 2   
Ribosomal_S10 Family P61885_5-99 6e-28 1 No_clan L 5 99 2   
Ribosomal_S11 Family P62010_15-133 1.5e-48 1 CL0267 M 15 133 2   
Ribosom_S12_S23 Family P61994_32-146 3.8e-50 1 CL0021 N 32 146 2   
Ribosomal_S13 Family Q8U0E2_9-137 5.1e-42 1 CL0303 O 9 137 2   
Ribosomal_S14 Family Q8U013_6-56 0.000000015 1 No_clan P 6 56 2   
Ribosomal_S17e Family Q8U0U1_1-66 8.4e-17 1 No_clan S 1 66 2   
Ribosomal_S19e Family Q9V0G8_3-139 2.4e-58 1 CL0123 U 3 139 2   
Ribosomal_S24e Family Q8U442_20-98 2.2e-27 1 No_clan V 20 98 2   
Ribosomal_S27e Family Q8U474_9-63 2.1e-27 1 CL0167 W 9 63 2   
Ribosomal_S28e Family Q8U159_4-67 6.8e-30 1 CL0021 X 4 67 2   
SCOP domains
No SCOP domains
GO terms
No GO terms
Sequences
Download file with secondary structure created by Stride  
5jb3.pdb1.pdb:   [ download sequences in FASTA format ]
0 (protein): 
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1 (protein): 
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3 (protein): 
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6 (protein): 
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7 (protein): 
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8 (protein): 
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9 (protein): 
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A (protein): 
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B (protein): 
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C (protein): 
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D (protein): 
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E (protein): 
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F (protein): 
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G (protein): 
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H (protein): 
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I (protein): 
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J (protein): 
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K (protein): 
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L (protein): 
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M (protein): 
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N (protein): 
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O (protein): 
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P (protein): 
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Q (protein): 
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R (protein): 
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S (protein): 
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T (protein): 
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U (protein): 
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V (protein): 
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W (protein): 
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X (protein): 
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Y (protein): 
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Z (protein): 
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2 (rna): 
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4 (rna): 
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5 (rna): 
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