General information
PDB ID 5JEA
Title STRUCTURE OF A CYTOPLASMIC 11-SUBUNIT RNA EXOSOME COMPLEX INCLUDING SKI7, BOUND TO RNA
PDB header HYDROLASE/RNA
Date 2016-04-18
Experimental method X-RAY DIFFRACTION
Resolution (A) 2.65
Kind rna
Organism SACCHAROMYCES CEREVISIAE, SYNTHETIC CONSTRUCT
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
PRIDB
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb5jea.pdb ABCDEFGHIJK R 0
Biounits:
5jea.pdb1.pdb ABCDEFGHIJK R 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
RNase_PH Domain Q05636_32-165 7.8e-20 1 CL0329 A 32 165   
RNase_PH_C Domain Q05636_191-271 7.9e-19 1 No_clan A 191 271   
RNase_PH Domain P46948_21-153 1.5e-24 1 CL0329 B 21 153   
RNase_PH_C Domain P46948_156-220 4e-05 1 No_clan B 156 220   
RNase_PH Domain P25359_48-244 2.8e-26 1 CL0329 C 48 244   
RNase_PH Domain P53256_2-126 2.5e-19 1 CL0329 D 1 126   
RNase_PH_C Domain P53256_129-201 1.1e-09 1 No_clan D 129 201   
RNase_PH Domain Q12277_30-155 9.2e-07 1 CL0329 E 30 155   
RNase_PH_C Domain Q12277_183-254 4.9e-05 1 No_clan E 183 254   
RNase_PH Domain P48240_42-186 6.4e-20 1 CL0329 F 43 186   
KH_6 Domain Q08285_153-202 6.7e-14 1 CL0007 G 153 202   
ECR1_N Domain P38792_54-91 8.7e-17 1 No_clan H 54 91   
KH_6 Domain P38792_197-239 1.1e-09 1 CL0007 H 197 239   
EXOSC1 Domain P53859_132-237 1.9e-41 1 CL0021 I 132 237   
RNB Domain Q08162_531-863 3.4e-95 1 No_clan J 531 863 R   
Rrp44_CSD1 Domain Q08162_252-399 5.4e-60 1 CL0021 J 252 368   
Rrp44_S1 Domain Q08162_912-998 4.2e-28 1 CL0021 J 912 1001   
PIN_4 Domain Q08162_88-212 6.6e-15 1 CL0280 J 88 218   
Phage_lysozyme Domain P00720_27-148 0.00048 0 CL0037 K 214 382   
SCOP domains
No SCOP domains
GO terms
No GO terms
Sequences
Download file with secondary structure created by Stride  
5jea.pdb1.pdb:   [ download sequences in FASTA format ]
A (protein): 
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B (protein): 
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C (protein): 
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D (protein): 
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E (protein): 
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F (protein): 
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G (protein): 
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H (protein): 
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I (protein): 
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J (protein): 
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K (protein): 
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R (rna): 
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