General information
PDB ID 5JPQ
Title CRYO-EM STRUCTURE OF THE 90S PRE-RIBOSOME
PDB header RIBOSOME
Date 2016-05-04
Experimental method ELECTRON MICROSCOPY
Resolution (A) 7.3
Kind rna
Organism CHAETOMIUM THERMOPHILUM
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CATH PDBsum HSSP PDBePISA UniProt
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Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb5jpq.pdb ABCDEFGHIJKLMNOPQRSTUVWXYZabcdefghijklmnopqrstuvwxyz01 23 0
Pfam domains
Name: Type: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Action:
S4 Domain 0.0000000000077 1 CL0492 b 109 156
Brix Domain 1.5e-31 1 CL0458 c 93 267 2
BP28CT Domain 1.6e-27 1 No_clan G 1594 2366
Helicase_RecD Domain 1.3e-50 1 CL0023 i 282 497
Helicase_RecD Domain 1.3e-50 1 CL0023 j 282 497
Ribosomal_L1 Domain 6.8e-29 1 No_clan k 24 234 2
Ribosomal_L1 Domain 1.2e-16 1 No_clan k 183 289
RS4NT Domain 7e-20 1 No_clan p 3 39 2
Ribosomal_S7 Domain 3.9e-37 1 No_clan q 53 225 2
Ribosomal_L7Ae Domain 5.2e-34 1 CL0101 U 20 114 32
S4 Domain 0.0000000000024 1 CL0492 u 107 153
Ribosomal_L7Ae Domain 5.2e-34 1 CL0101 V 20 114 3
Ribosomal_S15 Domain 0.0000000000000016 1 CL0600 v 70 149 32
Ribosomal_S13_N Domain 0.00000000055 1 No_clan v 35 60 3
Fibrillarin Domain 2.9e-101 1 CL0063 W 6 231 23
Fibrillarin Domain 2.9e-101 1 CL0063 X 6 231 2
Ribosomal_S17 Domain 1.6e-24 1 CL0021 y 72 140 2
RTC Domain 3e-44 1 CL0290 Z 9 339 2
RTC_insert Domain 9.7e-30 1 No_clan Z 183 284
Ribosomal_S8 Domain 4.7e-24 1 No_clan z 5 130 2
Ribosomal_S24e Family 1.1e-29 1 No_clan 0 22 100 2
Ribosomal_S28e Family 8.3e-23 1 CL0021 1 7 53 2
Ribosomal_S4 Family 0.00000012 1 CL0492 b 15 79
Fcf1 Family 9.7e-34 1 CL0280 d 81 169
EMG1 Family 1.2e-71 1 CL0098 e 43 246
EMG1 Family 9e-79 1 CL0098 f 43 246 2
tRNA_bind_2 Family 4.9e-45 1 No_clan i 803 934
DUF1726 Family 9.9e-31 1 CL0023 i 59 203
GNAT_acetyltr_2 Family 9.4e-24 1 CL0257 i 539 593
GNAT_acetyltr_2 Family 5.6e-22 1 CL0257 i 658 767
GNAT_acetyltr_2 Family 1e-20 1 CL0257 i 612 721
tRNA_bind_2 Family 0.00000000041 1 No_clan i 774 834
GNAT_acetyltr_2 Family 7e-60 1 CL0257 j 539 721
tRNA_bind_2 Family 5.1e-45 1 No_clan j 803 934
DUF1726 Family 1e-30 1 CL0023 j 59 203
GNAT_acetyltr_2 Family 6.5e-22 1 CL0257 j 659 767
tRNA_bind_2 Family 0.00000000043 1 No_clan j 774 834
Ribosomal_S3Ae Family 8.2e-80 1 No_clan o 17 227 2
Ribosomal_S4e Family 4.5e-30 1 No_clan p 97 171 2
40S_S4_C Family 2.9e-19 1 No_clan p 214 259
Ribosomal_S6e Family 1e-54 1 No_clan r 1 126 2
Nop Family 1.7e-73 1 No_clan S 146 373 3
Ribosomal_S7e Family 1.9e-59 1 CL0652 s 3 187 3
Nop Family 1.7e-73 1 No_clan T 146 373 23
Ribosomal_S8e Family 2.7e-52 1 No_clan t 2 191 2
Ribosomal_S11 Family 8.9e-45 1 CL0267 w 15 129 23
Ribosomal_S9 Family 1e-32 1 CL0329 x 11 143 2
Ribosomal_S17_N Family 3.2e-32 1 No_clan y 4 70 2
WD40 Repeat 0.00000044 1 CL0186 I 574 613
ANAPC4_WD40 Repeat 0.000075 1 CL0186 I 213 304
WD40 Repeat 0.000049 1 CL0186 Y 221 264
SCOP domains
No SCOP domains
GO terms
No GO terms
Sequences
Download file with secondary structure created by Stride  
pdb5jpq.pdb:   [ download sequences in FASTA format ]
0 (protein): 
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1 (protein): 
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a (protein): 
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b (protein): 
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C (protein): 
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D (protein): 
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E (protein): 
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F (protein): 
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g (protein): 
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h (protein): 
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i (protein): 
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J (protein): 
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k (protein): 
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l (protein): 
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m (protein): 
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n (protein): 
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O (protein): 
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p (protein): 
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Q (protein): 
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R (protein): 
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S (protein): 
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t (protein): 
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U (protein): 
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v (protein): 
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W (protein): 
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x (protein): 
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y (protein): 
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z (protein): 
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2 (rna): 
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3 (rna): 
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