General information
PDB ID 5K0Y
Title M48S LATE-STAGE INITIATION COMPLEX, PURIFIED FROM RABBIT RETICULOCYTES LYSATES, DISPLAYING EIF2 TERNARY COMPLEX AND EIF3 I AND G SUBUNITS RELOCATED TO THE INTERSUBUNIT FACE
PDB header TRANSLATION
Date 2016-05-17
Experimental method ELECTRON MICROSCOPY
Resolution (A) 5.8
Kind rna
Organism ORYCTOLAGUS CUNICULUS, HOMO SAPIENS
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
PRIDB
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb5k0y.pdb PGHIJKLMOQRSTUVWXYZabcdefghijklmnopqrst NAF 0
Biounits:
5k0y.pdb1.pdb PGHIJKLMOQRSTUVWXYZabcdefghijklmnopqrst NAF 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Ribosomal_S8 Domain G1TG89_5-130 2.1e-22 1 No_clan a 5 130 A   
Ribosomal_S5 Domain G1TUT9_82-146 2.6e-32 1 CL0196 c 87 151 AF   
Ribosomal_S5_C Domain G1TUT9_165-236 3.5e-27 1 CL0329 c 170 241 A   
Ribosomal_S17 Domain G1TRM4_75-144 1.8e-29 1 CL0021 G 75 144 AF   
Ribosomal_S3_C Domain G1TNM3_143-226 6.5e-23 1 No_clan g 105 188 AF   
KH_2 Domain G1TNM3_58-134 0.000000000022 1 CL0007 g 20 96 AF   
RS4NT Domain G1TK17_3-39 2.2e-21 1 No_clan I 3 39 A   
S4 Domain 0.00045 0 CL0492 I 42 90 A
S4 Domain B7NZS8_108-154 0.000000000039 1 CL0492 K 108 154 A   
Ribosomal_S19 Domain G1U0Q2_43-128 2.4e-40 1 No_clan n 43 128 A   
RRM_1 Domain O75821_241-310 5.9e-20 1 CL0221 O 241 310 A   
Ribosomal_S27 Domain G1SK22_102-147 1.1e-28 1 CL0167 p 102 147 AN   
S1 Domain G1T2G4_14-88 0.0000000000000019 1 CL0021 P 14 88 AN   
Ribosomal_L7Ae Domain G1SFR8_16-111 2.4e-30 1 CL0101 r 16 111 A   
eIF2_C Domain G1SRA8_396-477 5.4e-37 1 No_clan S 382 472   
GTP_EFTU Domain G1SRA8_52-261 3.6e-22 1 CL0023 S 52 258 AN   
GTP_EFTU_D2 Domain G1SRA8_292-374 0.0000000000017 1 CL0575 S 289 372 N   
S10_plectin Domain G1T168_63-155 5.4e-51 1 No_clan t 3 98 A   
Ribosomal_S7 Domain U3KMN4_66-219 2.9e-37 1 No_clan U 51 204 AF   
Ribosomal_S13_N Domain G1SP51_2-60 2.3e-31 1 No_clan Z 2 60 A   
Ribosomal_S15 Domain G1SP51_70-148 9.2e-16 1 CL0600 Z 70 149 A   
Ribosomal_S21e Family G1TM82_1-80 3.5e-40 1 No_clan b 1 80 A   
Ribosomal_S17e Family G1TU13_2-122 2.1e-70 1 No_clan e 1 119 A   
Ribosomal_S2 Family G1TWL4_111-184 0.00000000000064 1 CL0067 f 111 184 A   
Ribosomal_S2 Family G1TWL4_18-118 0.000000000033 1 CL0067 f 18 118 A   
Ribosomal_S17_N Family G1TRM4_5-73 3.9e-37 1 No_clan G 5 73 AF   
Ribosomal_S9 Family G1SGX4_40-172 4.5e-34 1 CL0329 H 14 146 AN   
Ribosomal_S10 Family G1SIZ2_21-115 3.3e-31 1 No_clan h 21 115 A   
Ribosomal_S3Ae Family G1TN72_19-221 2.8e-106 1 No_clan i 19 221 A   
Ribosomal_S4e Family G1TK17_95-169 1.5e-39 1 No_clan I 95 169 A   
40S_S4_C Family G1TK17_212-258 1.7e-30 1 No_clan I 212 259 A   
KOW Family G1TK17_177-211 0.000021 1 CL0107 I 177 211 A   
Ribosomal_S11 Family G1T1F0_34-152 2.6e-47 1 CL0267 j 29 147 AF   
Ribosomal_S14 Family G1U7M4_6-55 0.0000000000000022 1 No_clan J 6 55 A   
Ribosomal_S26e Family G1TFE8_2-97 2.3e-50 1 No_clan k 2 100 AF   
Ribosomal_S4 Family B7NZS8_9-140 0.0000098 1 CL0492 K 10 107 AF   
Ribosomal_S13 Family G1TPG3_14-142 2.3e-56 1 CL0303 L 14 142 AF   
Ribosomal_S28e Family G1TIB4_8-68 1.8e-35 1 CL0021 l 7 68 AF   
eIF3g Family O75821_103-140 0.00000085 1 CL0511 M 103 140   
Ribosomal_S8e Family G1TJW1_2-190 4.1e-61 1 No_clan o 2 190 A   
EIF_2_alpha Family G1T2G4_130-244 5.6e-37 1 No_clan P 130 244 AN   
Ribosomal_S6e Family G1TM55_1-126 8e-70 1 No_clan q 1 126 A   
Ribosom_S12_S23 Family G1SZ47_29-140 1.4e-52 1 CL0021 Q 29 142 A   
Ribosomal_S19e Family G1TN62_5-141 4.7e-58 1 CL0123 R 5 141 A   
Ribosomal_S24e Family G1TS40_24-102 1.6e-45 1 No_clan s 24 102 AN   
Ribosomal_S30 Family G1T8A2_75-132 3.6e-29 1 No_clan V 75 132 AF   
Ribosomal_S25 Family G1TDB3_40-112 6.6e-38 1 CL0123 W 41 112 A   
Ribosomal_S7e Family G1SVB0_7-191 6.6e-94 1 CL0652 X 7 191 A   
Ribosomal_S27e Family G1TZ76_28-82 1.4e-30 1 CL0167 Y 28 82 A   
WD40 Repeat G1SJB4_224-260 0.0000000067 1 CL0186 m 95 133   
WD40 Repeat G1SJB4_224-260 0.0000000091 1 CL0186 m 53 91 A   
WD40 Repeat G1SJB4_224-260 0.000036 1 CL0186 m 136 178   
WD40 Repeat G1SJB4_224-260 0.000047 1 CL0186 m 182 220   
WD40 Repeat G1SJB4_224-260 0.00011 1 CL0186 m 224 260   
WD40 Repeat Q5IH81_275-312 0.0000044 1 CL0186 T 42 80 A   
WD40 Repeat Q5IH81_3-37 0.000019 1 CL0186 T 275 312   
SCOP domains
No SCOP domains
GO terms
No GO terms
Sequences
Download file with secondary structure created by Stride  
5k0y.pdb1.pdb:   [ download sequences in FASTA format ]
a (protein): 
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b (protein): 
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c (protein): 
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d (protein): 
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e (protein): 
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f (protein): 
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g (protein): 
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H (protein): 
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i (protein): 
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J (protein): 
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K (protein): 
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L (protein): 
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m (protein): 
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O (protein): 
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P (protein): 
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Q (protein): 
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r (protein): 
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s (protein): 
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t (protein): 
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U (protein): 
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V (protein): 
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W (protein): 
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X (protein): 
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Y (protein): 
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Z (protein): 
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N (rna): 
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