General information
PDB ID 5K98
Title STRUCTURE OF HIPA-HIPB-O2-O3 COMPLEX
PDB header TRANSCRIPTION/DNA
Date 2016-05-31
Experimental method X-RAY DIFFRACTION
Resolution (A) 3.99
Kind dna
Organism ESCHERICHIA COLI (STRAIN K12), ESCHERICHIA COLI MP020980.2, SYNTHETIC CONSTRUCT
Download
complex
View in
Jmol
Quick Links
PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb5k98.pdb ABDP TE 0
Biounits:
5k98.pdb1.pdb ABDP TE 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
HipA_C Domain P23874_149-403 2.3e-47 1 CL0016 A 149 403   
Couple_hipA Domain P23874_4-104 2.4e-24 1 No_clan A 4 104   
HTH_3 Domain P23873_17-70 7.5e-15 1 CL0123 B 17 70 ET   
HipA_C Domain P23874_149-403 2.3e-47 1 CL0016 D 149 403   
Couple_hipA Domain P23874_4-104 2.4e-24 1 No_clan D 4 104   
HTH_3 Domain P23873_17-70 7.5e-15 1 CL0123 P 17 70 ET  H-Bb H-Mj L-Bb L-Mj 
SCOP domains
No SCOP domains
GO terms
Protein chains: GO type: GO description:
A/D=2-440 C cytosol
A/D=2-440 C protein-DNA complex
A/D=2-440 F ATP binding
A/D=2-440 F DNA-binding transcription repressor activity
A/D=2-440 F magnesium ion binding
A/D=2-440 F protein serine/threonine kinase activity
A/D=2-440 F sequence-specific DNA binding
A/D=2-440 F transcription regulatory region sequence-specific DNA binding
A/D=2-440 P dormancy process
A/D=2-440 P negative regulation of catalytic activity
A/D=2-440 P peptidyl-serine autophosphorylation
A/D=2-440 P response to antibiotic
A/D=2-440 P single-species biofilm formation
B/P=1-88 C protein-DNA complex
B/P=1-88 F bacterial-type RNA polymerase core promoter sequence-specific DNA binding
B/P=1-88 F DNA-binding transcription repressor activity
B/P=1-88 F sequence-specific DNA binding
B/P=1-88 F transcription regulatory region sequence-specific DNA binding
B/P=1-88 P negative regulation of transcription, DNA-templated
B/P=1-88 P transcription, DNA-templated
Sequences
Download file with secondary structure created by Stride  
5k98.pdb1.pdb:   [ download sequences in FASTA format ]
E (dna): 
Click "SHOW" for view sequence
T (dna): 
Click "SHOW" for view sequence
A (protein): 
Click "SHOW" for view sequence
B (protein): 
Click "SHOW" for view sequence
D (protein): 
Click "SHOW" for view sequence
P (protein): 
Click "SHOW" for view sequence
© NPIDB team 2003 - 2021

text