General information
PDB ID 5KRB
Title GCNF DNA BINDING DOMAIN - OCT4 DR0 COMPLEX
PDB header TRANSCRIPTION/DNA
Date 2016-07-07
Experimental method X-RAY DIFFRACTION
Resolution (A) 2.1
Kind dna
Organism MUS MUSCULUS
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
 PDIdb 
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb5krb.pdb BG AE 0
Biounits:
5krb.pdb1.pdb BG AE 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
zf-C4 Domain Q64249_74-142 2.3e-31 1 CL0167 B 73 142 AE  H-Bb H-Mj S-Bb S-Mj L-Bb 
zf-C4 Domain Q64249_74-142 4.9e-31 1 CL0167 G 74 142 AE  H-Bb H-Mj S-Bb L-Bb L-Mj 
SCOP domains
No SCOP domains
GO terms
Protein chains: GO type: GO description:
B/G=72-155 C nucleus
B/G=72-155 C transcription regulator complex
B/G=72-155 F DNA-binding transcription activator activity, RNA polymerase II-specific
B/G=72-155 F nuclear receptor activity
B/G=72-155 F protein homodimerization activity
B/G=72-155 F repressing transcription factor binding
B/G=72-155 F RNA polymerase II cis-regulatory region sequence-specific DNA binding
B/G=72-155 F sequence-specific DNA binding
B/G=72-155 F sequence-specific double-stranded DNA binding
B/G=72-155 F zinc ion binding
B/G=72-155 P cell differentiation
B/G=72-155 P gamete generation
B/G=72-155 P multicellular organism development
B/G=72-155 P negative regulation of transcription by RNA polymerase II
B/G=72-155 P positive regulation of transcription by RNA polymerase II
B/G=72-155 P regulation of transcription, DNA-templated
B/G=72-155 P spermatogenesis
Sequences
Download file with secondary structure created by Stride  
5krb.pdb1.pdb:   [ download sequences in FASTA format ]
A (dna): 
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E (dna): 
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B (protein): 
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G (protein): 
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